Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors

YJ Lin, AS Menon, Z Hu, SE Brenner - Human Genomics, 2024 - Springer
Background Variant interpretation is essential for identifying patients' disease-causing
genetic variants amongst the millions detected in their genomes. Hundreds of Variant Impact …

Genomic responses to parallel temperature gradients in the eelgrass Zostera marina in adjacent bays

LM Schiebelhut, RK Grosberg, JJ Stachowicz… - Molecular …, 2023 - Wiley Online Library
The extent of parallel genomic responses to similar selective pressures depends on a
complex array of environmental, demographic, and evolutionary forces. Laboratory …

Seascape Genomics of Red Abalone: Limited Range‐Wide Population Structure and Evidence for Local Adaptation

JS Griffiths, K Smith, A Whitehead - Molecular Ecology, 2025 - Wiley Online Library
Characterising patterns of genetic diversity including evidence of local adaptation is relevant
for predicting and managing species recovering from overexploitation in the face of climate …

Genetic and morphological shifts associated with climate change in a migratory bird

N Adams, T Dias, HR Skeen, T Pegan, DE Willard… - BMC biology, 2025 - Springer
Background Rapid morphological change is emerging as a consequence of climate change
in many systems. It is intuitive to hypothesize that temporal morphological trends are driven …

Genetics of flight in spongy moths (Lymantria dispar ssp.): functionally integrated profiling of a complex invasive trait

GS Blackburn, CI Keeling, J Prunier, MA Keena… - BMC genomics, 2024 - Springer
Background Flight can drastically enhance dispersal capacity and is a key trait defining the
potential of exotic insect species to spread and invade new habitats. The phytophagous …

Variant Impact Predictor database (VIPdb), version 2: Trends from 25 years of genetic variant impact predictors

YJ Lin, AS Menon, Z Hu, SE Brenner - bioRxiv, 2024 - pmc.ncbi.nlm.nih.gov
Background: Variant interpretation is essential for identifying patients' disease-causing
genetic variants amongst the millions detected in their genomes. Hundreds of Variant Impact …

Polygenic risks scores for autoimmune related diseases are significantly different and skewed in cancer exceptional responders

S Chen, ALM Tan, C Perry, S Churchill, M Vella, J Mao… - medRxiv, 2023 - medrxiv.org
A group of 54 exceptional responders (ER's) to cancer treatment across a variety of cancers
and treatments were compared to typical cancer patients using previously defined polygenic …

GWLD: an R package for genome-wide linkage disequilibrium analysis

R Zhang, H Wu, Y Li, Z Huang, Z Yin… - G3: Genes …, 2023 - academic.oup.com
Linkage disequilibrium (LD) analysis is fundamental to the investigation of the genetic
architecture of complex traits (eg human disease, animal and plant breeding) and …

The Role of Immune Cells in Colorectal Cancer: A Mendelian Randomization Study and Validation in A Single-Center Case-Control Trial.

LB Sun, XP Zhou, XY Song, JP Xing, SH Gao - 2024 - researchsquare.com
Background: Although a growing body of research suggests that alterations in the
composition of the immune system play a critical role in the development of colorectal …

Bio-computing approaches and tools for identification of single nucleotide polymorphisms: a comprehensive review

N Sohi, A Singh - International Journal of Computer Aided …, 2021 - inderscienceonline.com
Single nucleotide polymorphisms (SNPs) are the most common form of genetic sequence
variations. SNPs involve substitution of one nucleotide for another in the DNA sequence …