A genomic overview of the population structure of Salmonella
For many decades, Salmonella enterica has been subdivided by serological properties into
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
Persistent infection and long-term carriage of typhoidal and nontyphoidal salmonellae
O Gal-Mor - Clinical microbiology reviews, 2018 - Am Soc Microbiol
The ability of pathogenic bacteria to affect higher organisms and cause disease is one of the
most dramatic properties of microorganisms. Some pathogens can establish transient …
most dramatic properties of microorganisms. Some pathogens can establish transient …
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …
population structures within several bacterial genera that include pathogens. Here, we …
Performance of neural network basecalling tools for Oxford Nanopore sequencing
Background Basecalling, the computational process of translating raw electrical signal to
nucleotide sequence, is of critical importance to the sequencing platforms produced by …
nucleotide sequence, is of critical importance to the sequencing platforms produced by …
SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data
SeqSero, launched in 2015, is a software tool for Salmonella serotype determination from
whole-genome sequencing (WGS) data. Despite its routine use in public health and food …
whole-genome sequencing (WGS) data. Despite its routine use in public health and food …
[PDF][PDF] The temporal dynamics of antimicrobial-resistant Salmonella enterica and predominant serovars in China
Y Wang, Y Liu, N Lyu, Z Li, S Ma, D Cao… - National Science …, 2023 - academic.oup.com
Salmonella enterica is one of the most common bacterial pathogens in humans and
animals. Systematic studies on the trends and geographical distribution of antimicrobial …
animals. Systematic studies on the trends and geographical distribution of antimicrobial …
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
CV Pulford, BM Perez-Sepulveda, R Canals… - Nature …, 2021 - nature.com
Bloodstream infections caused by nontyphoidal Salmonella are a major public health
concern in Africa, causing~ 49,600 deaths every year. The most common Salmonella …
concern in Africa, causing~ 49,600 deaths every year. The most common Salmonella …
ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data
K Bessonov, C Laing, J Robertson… - Microbial …, 2021 - microbiologyresearch.org
Escherichia coli is a priority foodborne pathogen of public health concern and phenotypic
serotyping provides critical information for surveillance and outbreak detection activities …
serotyping provides critical information for surveillance and outbreak detection activities …
Genomic characterization of antimicrobial-resistant Salmonella enterica in duck, chicken, and pig farms and retail markets in Eastern China
B Tang, M Elbediwi, RB Nambiar, H Yang… - Microbiology …, 2022 - Am Soc Microbiol
Antimicrobial-resistant Salmonella enterica poses a significant public health concern
worldwide. However, the dissemination of Salmonella enterica among food animals in …
worldwide. However, the dissemination of Salmonella enterica among food animals in …
Embracing Diversity: Differences in Virulence Mechanisms, Disease Severity, and Host Adaptations Contribute to the Success of Nontyphoidal Salmonella as a …
RA Cheng, CR Eade, M Wiedmann - Frontiers in microbiology, 2019 - frontiersin.org
Not all Salmonella enterica serovars cause the same disease. S. enterica represents an
incredibly diverse species comprising> 2,600 unique serovars. While some S. enterica …
incredibly diverse species comprising> 2,600 unique serovars. While some S. enterica …