Phylogenetic divergence and adaptation of Nitrososphaeria across lake depths and freshwater ecosystems

M Ren, J Wang - The ISME Journal, 2022 - academic.oup.com
Thaumarchaeota (now the class Nitrososphaeria in the phylum Thermoproteota in GTDB
taxonomy) are abundant across marine and soil habitats; however, their genomic diversity …

Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage

L Reji, CA Francis - The ISME Journal, 2020 - academic.oup.com
Thaumarchaeota constitute an abundant and ubiquitous phylum of Archaea that play critical
roles in the global nitrogen and carbon cycles. Most well-characterized members of the …

Discordant patterns between nitrogen-cycling functional traits and taxa in distant coastal sediments reveal important community assembly mechanisms

W Song, H Li, Y Zhou, X Liu, Y Li, M Wang… - Frontiers in …, 2023 - frontiersin.org
A central question in microbial ecology is how immense microbes are assembled in
changing natural environments while executing critical ecosystem functions. Over the past …

Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development

ET Sieradzki, EE Nuccio, J Pett-Ridge, MK Firestone - Msystems, 2023 - Am Soc Microbiol
Interactions between plant roots and rhizosphere bacteria modulate nitrogen (N)-cycling
processes and create habitats rich in low molecular weight compounds (exudates) and …

Depth-differentiation and seasonality of planktonic microbial assemblages in the Monterey Bay upwelling system

L Reji, BB Tolar, FP Chavez, CA Francis - Frontiers in Microbiology, 2020 - frontiersin.org
Coastal upwelling regions are hotspots of biological productivity, supporting diverse
communities of microbial life and metabolisms. Monterey Bay (MB), a coastal ocean …

Bacterial and archaeal lipids trace chemo (auto) trophy along the redoxcline in Vancouver Island fjords

S Kusch, SG Wakeham, N Dildar, C Zhu… - …, 2021 - Wiley Online Library
Marine oxygen minimum zones play a crucial role in the global oceanic carbon, nitrogen,
and sulfur cycles as they harbor microbial communities that are adapted to the water column …

Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment …

BB Tolar, L Reji, JM Smith, M Blum… - Limnology and …, 2020 - Wiley Online Library
Nitrification plays a key role in marine ecosystems where Thaumarchaeota are thought to be
responsible for most of the ammonia oxidation in the water column. Over a 2‐yr, near …

Shift in archaeal community along a soil profile in coastal wheat‐maize rotation fields of different reclamation ages

S Wan, X Liao, TT Zhou, Y Wu, A Hu… - Land Degradation & …, 2021 - Wiley Online Library
Coastal mudflats reclamation activities show a strong influence on soil properties and
microbial community activity, which drive soil carbon and nitrogen cycling. Studies have …

Network analysis of 16S rRNA sequences suggests microbial keystone taxa contribute to marine N2O cycling

BD Jameson, SA Murdock, Q Ji, CJ Stevens… - Communications …, 2023 - nature.com
The mechanisms by which large-scale microbial community function emerges from complex
ecological interactions between individual taxa and functional groups remain obscure. We …

Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variations in the northern slope of the South China Sea

Y Lu, Y Lv, Y Zhang, Q Liu, X Xu… - Environmental …, 2023 - Wiley Online Library
Thaumarchaeota are among the most abundant prokaryotes in the ocean, playing important
roles in carbon and nitrogen cycling. Marine Thaumarchaeota ecotypes exhibit depth …