Exploring G protein-coupled receptors (GPCRs) ligand space via cheminformatics approaches: impact on rational drug design

S Basith, M Cui, SJY Macalino, J Park… - Frontiers in …, 2018 - frontiersin.org
The primary goal of rational drug discovery is the identification of selective ligands which act
on single or multiple drug targets to achieve the desired clinical outcome through the …

Polypharmacology modelling using proteochemometrics (PCM): recent methodological developments, applications to target families, and future prospects

I Cortés-Ciriano, QU Ain, V Subramanian… - …, 2015 - pubs.rsc.org
Proteochemometric (PCM) modelling is a computational method to model the bioactivity of
multiple ligands against multiple related protein targets simultaneously. Hence it has been …

ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation

J Dong, DS Cao, HY Miao, S Liu, BC Deng… - Journal of …, 2015 - Springer
Background Molecular descriptors and fingerprints have been routinely used in QSAR/SAR
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …

[HTML][HTML] Proteochemometrics–recent developments in bioactivity and selectivity modeling

BJ Bongers, AP IJzerman, GJP Van Westen - Drug Discovery Today …, 2019 - Elsevier
Proteochemometrics is a machine learning based modeling approach relying on a
combination of ligand and protein descriptors. With ongoing developments in machine …

Kinome‐wide profiling prediction of small molecules

FA Sorgenfrei, S Fulle, B Merget - ChemMedChem, 2018 - Wiley Online Library
Extensive kinase profiling data, covering more than half of the human kinome, are available
nowadays and allow the construction of activity prediction models of high practical utility …

The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope

T Qiu, J Qiu, J Feng, D Wu, Y Yang… - Briefings in …, 2017 - academic.oup.com
As an extension of the conventional quantitative structure activity relationship models,
proteochemometric (PCM) modelling is a computational method that can predict the …

Modelling ligand selectivity of serine proteases using integrative proteochemometric approaches improves model performance and allows the multi-target dependent …

QU Ain, O Méndez-Lucio, IC Ciriano… - Integrative …, 2014 - academic.oup.com
Serine proteases, implicated in important physiological functions, have a high intra-family
similarity, which leads to unwanted off-target effects of inhibitors with insufficient selectivity …

PbsNRs: predict the potential binders and scaffolds for nuclear receptors

G Zheng, D Wu, X Wei, D Xu, T Mao… - Briefings in …, 2025 - academic.oup.com
Nuclear receptors (NRs) are a class of essential proteins that regulate the expression of
specific genes and are associated with multiple diseases. In silico methods for prescreening …

Proteochemometric modeling in a Bayesian framework

I Cortes-Ciriano, GJP van Westen, EB Lenselink… - Journal of …, 2014 - Springer
Proteochemometrics (PCM) is an approach for bioactivity predictive modeling which models
the relationship between protein and chemical information. Gaussian Processes (GP) …

Prospectively validated proteochemometric models for the prediction of small-molecule binding to bromodomain proteins

KA Giblin, SJ Hughes, H Boyd… - Journal of Chemical …, 2018 - ACS Publications
The bromodomain-containing proteins are a ligandable family of epigenetic readers, which
play important roles in oncological, cardiovascular, and inflammatory diseases. Achieving …