Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders

C Gaiteri, Y Ding, B French, GC Tseng… - Genes, brain and …, 2014 - Wiley Online Library
In a research environment dominated by reductionist approaches to brain disease
mechanisms, gene network analysis provides a complementary framework in which to tackle …

Linking deregulation of non-coding RNA to the core pathophysiology of Alzheimer's disease: An integrative review

MJ Millan - Progress in neurobiology, 2017 - Elsevier
The human genome encodes a vast repertoire of protein non-coding RNAs (ncRNA), some
specific to the brain. MicroRNAs, which interfere with the translation of target mRNAs, are of …

Predicting hub genes associated with cervical cancer through gene co-expression networks

SP Deng, L Zhu, DS Huang - IEEE/ACM Transactions on …, 2015 - ieeexplore.ieee.org
Cervical cancer is the third most common malignancy in women worldwide. It remains a
leading cause of cancer-related death for women in developing countries. In order to …

Human miRNome profiling identifies microRNAs differentially present in the urine after kidney injury

K Ramachandran, J Saikumar, V Bijol… - Clinical …, 2013 - academic.oup.com
BACKGROUND Extracellular microRNAs (miRNAs) have been proposed as potentially
robust and stable biomarkers of various disease conditions. The primary objective of this …

Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks

SP Deng, L Zhu, DS Huang - BMC genomics, 2015 - Springer
Background Bladder cancer is the most common malignant tumor of the urinary system and
it is a heterogeneous disease with both superficial and invasive growth. However, its …

Identification of candidate miRNA biomarkers for pancreatic ductal adenocarcinoma by weighted gene co-expression network analysis

M Giulietti, G Occhipinti, G Principato, F Piva - Cellular Oncology, 2017 - Springer
Purpose Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive malignancy with
a dismal prognosis which is, among others, due to a lack of suitable biomarkers and …

DCGL v2. 0: an R package for unveiling differential regulation from differential co-expression

J Yang, H Yu, BH Liu, Z Zhao, L Liu, LX Ma, YX Li… - PloS one, 2013 - journals.plos.org
Motivation Differential co-expression analysis (DCEA) has emerged in recent years as a
novel, systematic investigation into gene expression data. While most DCEA studies or tools …

Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease

AD Henriques, W Machado-Silva, REP Leite… - Mechanisms of Ageing …, 2020 - Elsevier
Background MicroRNAs (miRNAs) emerged as regulatory elements, with up to 70% of all
miRNAs found in the brain, playing key roles in the onset of Alzheimer's disease (AD) …

Genetic deficiency of MicroRNA‐15a/16‐1 confers resistance to neuropathological damage and cognitive dysfunction in experimental vascular cognitive impairment …

C Zhou, P Sun, Y Xu, Y Chen, Y Huang… - Advanced …, 2022 - Wiley Online Library
Chronic cerebral hypoperfusion‐derived brain damage contributes to the progression of
vascular cognitive impairment and dementia (VCID). Cumulative evidence has shown that …

Predicted overlapping microRNA regulators of acetylcholine packaging and degradation in neuroinflammation-related disorders

B Nadorp, H Soreq - Frontiers in molecular neuroscience, 2014 - frontiersin.org
MicroRNAs (miRNAs) can notably control many targets each and regulate entire cellular
pathways, but whether miRNAs can regulate complete neurotransmission processes is …