Histone sumoylation and chromatin dynamics

HY Ryu, M Hochstrasser - Nucleic Acids Research, 2021 - academic.oup.com
Chromatin structure and gene expression are dynamically controlled by post-translational
modifications (PTMs) on histone proteins, including ubiquitylation, methylation, acetylation …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

METTL3 and N6-methyladenosine promote homologous recombination-mediated repair of DSBs by modulating DNA-RNA hybrid accumulation

C Zhang, L Chen, D Peng, A Jiang, Y He, Y Zeng… - Molecular cell, 2020 - cell.com
Double-strand breaks (DSBs) are the most deleterious DNA lesions, which, if left unrepaired,
may lead to genome instability or cell death. Here, we report that, in response to DSBs, the …

Structural biology of RNA polymerase II transcription: 20 years on

S Osman, P Cramer - Annual Review of Cell and …, 2020 - annualreviews.org
Gene transcription by RNA polymerase II (Pol II) is the first step in the expression of the
eukaryotic genome and a focal point for cellular regulation during development …

CDK9: a signaling hub for transcriptional control

CW Bacon, I D'Orso - Transcription, 2019 - Taylor & Francis
ABSTRACT Cyclin-dependent kinase 9 (CDK9) is critical for RNA Polymerase II (Pol II)
transcription initiation, elongation, and termination in several key biological processes …

The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes

D Blazek, J Kohoutek, K Bartholomeeusen… - Genes & …, 2011 - genesdev.cshlp.org
Various cyclin-dependent kinase (Cdk) complexes have been implicated in the regulation of
transcription. In this study, we identified a 70-kDa Cyclin K (CycK) that binds Cdk12 and …

Progression through the RNA polymerase II CTD cycle

S Buratowski - Molecular cell, 2009 - cell.com
The C-terminal domain of RNA polymerase II's largest subunit undergoes dynamic
phosphorylation during transcription, and the different phosphorylation patterns that …

Controlling the elongation phase of transcription with P-TEFb

BM Peterlin, DH Price - Molecular cell, 2006 - cell.com
The positive transcription elongation factor b (P-TEFb) is a cyclin-dependent kinase that
controls the elongation phase of transcription by RNA polymerase II (RNAPII). This process …

The RNA polymerase II CTD coordinates transcription and RNA processing

JP Hsin, JL Manley - Genes & development, 2012 - genesdev.cshlp.org
The C-terminal domain (CTD) of the RNA polymerase II largest subunit consists of multiple
heptad repeats (consensus Tyr1–Ser2–Pro3–Thr4–Ser5–Pro6–Ser7), varying in number …

The general transcription machinery and general cofactors

MC Thomas, CM Chiang - Critical reviews in biochemistry and …, 2006 - Taylor & Francis
In eukaryotes, the core promoter serves as a platform for the assembly of transcription
preinitiation complex (PIC) that includes TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, and RNA …