Diagnostic interpretation of genetic studies in patients with primary immunodeficiency diseases: a working group report of the Primary Immunodeficiency Diseases …

IK Chinn, AY Chan, K Chen, J Chou, MJ Dorsey… - Journal of Allergy and …, 2020 - Elsevier
Genetic testing has become an integral component of the diagnostic evaluation of patients
with suspected primary immunodeficiency diseases. Results of genetic testing can have a …

Evaluating variant calling tools for non-matched next-generation sequencing data

S Sandmann, AO De Graaf, M Karimi… - Scientific reports, 2017 - nature.com
Valid variant calling results are crucial for the use of next-generation sequencing in clinical
routine. However, there are numerous variant calling tools that usually differ in algorithms …

The RD‐Connect Genome‐Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases

S Laurie, D Piscia, L Matalonga, A Corvó… - Human …, 2022 - Wiley Online Library
Rare disease patients are more likely to receive a rapid molecular diagnosis nowadays
thanks to the wide adoption of next‐generation sequencing. However, many cases remain …

The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species

M Lefouili, K Nam - Scientific reports, 2022 - nature.com
Identification of genetic variations is a central part of population and quantitative genomics
studies based on high-throughput sequencing data. Even though popular variant callers …

Solve-RD: systematic pan-European data sharing and collaborative analysis to solve rare diseases

B Zurek, K Ellwanger, LELM Vissers, R Schüle… - European Journal of …, 2021 - nature.com
For the first time in Europe hundreds of rare disease (RD) experts team up to actively share
and jointly analyse existing patient's data. Solve-RD is a Horizon 2020-supported EU …

Solving patients with rare diseases through programmatic reanalysis of genome-phenome data

L Matalonga, C Hernández-Ferrer, D Piscia… - European Journal of …, 2021 - nature.com
Reanalysis of inconclusive exome/genome sequencing data increases the diagnosis yield
of patients with rare diseases. However, the cost and efforts required for reanalysis prevent …

Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings

KB Hwang, IH Lee, H Li, DG Won… - Scientific reports, 2019 - nature.com
Comprehensive and accurate detection of variants from whole-genome sequencing (WGS)
is a strong prerequisite for translational genomic medicine; however, low concordance …

MECP2 variation in Rett syndrome—An overview of current coverage of genetic and phenotype data within existing databases

GS Townend, F Ehrhart, HJ van Kranen… - Human …, 2018 - Wiley Online Library
Rett syndrome (RTT) is a monogenic rare disorder that causes severe neurological
problems. In most cases, it results from a loss‐of‐function mutation in the gene encoding …

A Solve-RD ClinVar-based reanalysis of 1522 index cases from ERN-ITHACA reveals common pitfalls and misinterpretations in exome sequencing

AS Denommé-Pichon, L Matalonga, E de Boer… - Genetics in …, 2023 - Elsevier
Abstract Purpose Within the Solve-RD project (https://solve-rd. eu/), the European Reference
Network for Intellectual disability, TeleHealth, Autism and Congenital Anomalies aimed to …

TRAPPC9-CDG: A novel congenital disorder of glycosylation with dysmorphic features and intellectual disability

S Radenkovic, D Martinelli, Y Zhang, GJ Preston… - Genetics in …, 2022 - Elsevier
Purpose TRAPPC9 deficiency is an autosomal recessive disorder mainly associated with
intellectual disability (ID), microcephaly, and obesity. Previously, TRAPPC9 deficiency has …