Minimal residual disease diagnostics in acute lymphoblastic leukemia: need for sensitive, fast, and standardized technologies

JJM van Dongen, VHJ van der Velden… - Blood, The Journal …, 2015 - ashpublications.org
Monitoring of minimal residual disease (MRD) has become routine clinical practice in
frontline treatment of virtually all childhood acute lymphoblastic leukemia (ALL) and in many …

The promise and challenge of high-throughput sequencing of the antibody repertoire

G Georgiou, GC Ippolito, J Beausang, CE Busse… - Nature …, 2014 - nature.com
Efforts to determine the antibody repertoire encoded by B cells in the blood or lymphoid
organs using high-throughput DNA sequencing technologies have been advancing at an …

Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2

SCA Nielsen, F Yang, KJL Jackson, RA Hoh… - Cell host & …, 2020 - cell.com
B cells are critical for the production of antibodies and protective immunity to viruses. Here
we show that patients infected with severe acute respiratory syndrome coronavirus 2 (SARS …

VDJtools: unifying post-analysis of T cell receptor repertoires

M Shugay, DV Bagaev, MA Turchaninova… - PLoS computational …, 2015 - journals.plos.org
Despite the growing number of immune repertoire sequencing studies, the field still lacks
software for analysis and comprehension of this high-dimensional data. Here we report …

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic …

M Brüggemann, M Kotrova, H Knecht, J Bartram… - Leukemia, 2019 - nature.com
Amplicon-based next-generation sequencing (NGS) of immunoglobulin (IG) and T-cell
receptor (TR) gene rearrangements for clonality assessment, marker identification and …

Monitoring of circulating tumor DNA improves early relapse detection after axicabtagene ciloleucel infusion in large B-cell lymphoma: results of a prospective multi …

MJ Frank, NM Hossain, A Bukhari, E Dean… - Journal of Clinical …, 2021 - ascopubs.org
PURPOSE Although the majority of patients with relapsed or refractory large B-cell
lymphoma respond to axicabtagene ciloleucel (axi-cel), only a minority of patients have …

Diversity, cellular origin and autoreactivity of antibody-secreting cell population expansions in acute systemic lupus erythematosus

CM Tipton, CF Fucile, J Darce, A Chida, T Ichikawa… - Nature …, 2015 - nature.com
Acute systemic lupus erythematosus (SLE) courses with surges of antibody-secreting cells
(ASCs) whose origin, diversity and contribution to serum autoantibodies remain unknown …

High frequency of shared clonotypes in human B cell receptor repertoires

C Soto, RG Bombardi, A Branchizio, N Kose, P Matta… - Nature, 2019 - nature.com
The human genome contains approximately 20 thousand protein-coding genes, but the size
of the collection of antigen receptors of the adaptive immune system that is generated by the …

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

HX Liao, R Lynch, T Zhou, F Gao, SM Alam, SD Boyd… - Nature, 2013 - nature.com
Current human immunodeficiency virus-1 (HIV-1) vaccines elicit strain-specific neutralizing
antibodies. However, cross-reactive neutralizing antibodies arise in approximately 20% of …

Detection of ultra-rare mutations by next-generation sequencing

MW Schmitt, SR Kennedy, JJ Salk… - Proceedings of the …, 2012 - National Acad Sciences
Next-generation DNA sequencing promises to revolutionize clinical medicine and basic
research. However, while this technology has the capacity to generate hundreds of billions …