Spatial transcriptomics: technical aspects of recent developments and their applications in neuroscience and cancer research

HE Park, SH Jo, RH Lee, CP Macks, T Ku… - Advanced …, 2023 - Wiley Online Library
Spatial transcriptomics is a newly emerging field that enables high‐throughput investigation
of the spatial localization of transcripts and related analyses in various applications for …

Spatial transcriptomics in development and disease

R Zhou, G Yang, Y Zhang, Y Wang - Molecular Biomedicine, 2023 - Springer
The proper functioning of diverse biological systems depends on the spatial organization of
their cells, a critical factor for biological processes like shaping intricate tissue functions and …

Barcoded multiple displacement amplification for high coverage sequencing in spatial genomics

J Kim, S Kim, H Yeom, SW Song, K Shin, S Bae… - Nature …, 2023 - nature.com
Determining mutational landscapes in a spatial context is essential for understanding
genetically heterogeneous cell microniches. Current approaches, such as Multiple …

Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics

X Qiu, DY Zhu, J Yao, Z Jing, L Zuo, M Wang, KH Min… - BioRxiv, 2022 - biorxiv.org
Cells do not live in a vacuum, but in a milieu defined by cell–cell communication that can be
measured via emerging high-resolution spatial transcriptomics approaches. However …

Mapping cancer biology in space: applications and perspectives on spatial omics for oncology

S Lee, G Kim, JY Lee, AC Lee, S Kwon - Molecular Cancer, 2024 - Springer
Technologies to decipher cellular biology, such as bulk sequencing technologies and single-
cell sequencing technologies, have greatly assisted novel findings in tumor biology. Recent …

Spatially resolved transcriptomics: advances and applications

H Duan, T Cheng, H Cheng - Blood Science, 2023 - journals.lww.com
Spatial transcriptomics, which is capable of both measuring all gene activity in a tissue
sample and mapping where this activity occurs, is vastly improving our understanding of …

The epitranscriptome of high-grade gliomas: a promising therapeutic target with implications from the tumor microenvironment to endogenous retroviruses

CK Ramsoomair, M Ceccarelli, JD Heiss… - Journal of Translational …, 2023 - Springer
Abstract Glioblastoma (GBM) comprises 45.6% of all primary malignant brain cancers and is
one of the most common and aggressive intracranial tumors in adults. Intratumoral …

Fatty acid metabolites and the tumor microenvironment as potent regulators of cancer stem cell signaling

T Murai, S Matsuda - Metabolites, 2023 - mdpi.com
Individual cancer cells are not equal but are organized into a cellular hierarchy in which only
a rare few leukemia cells can self-renew in a manner reminiscent of the characteristic stem …

High-quality single-cell transcriptomics from ovarian histological sections during folliculogenesis

H Ikeda, S Miyao, S Nagaoka… - Life science …, 2023 - life-science-alliance.org
High-quality, straightforward single-cell RNA sequencing (RNA-seq) with spatial resolution
remains challenging. Here, we developed DRaqL (direct RNA recovery and quenching for …

More than a duologue: In-depth insights into epitranscriptomics and ferroptosis

JCT Cheung, G Deng, N Wong, Y Dong… - Frontiers in Cell and …, 2022 - frontiersin.org
Beyond transcription, RNA molecules are enzymatically modified to influence the biological
functions of living organisms. The term “epitranscriptomics” describes the changes in RNA …