Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing

D Guan, MM Halstead, AD Islas-Trejo… - Frontiers in …, 2022 - frontiersin.org
To identify and annotate transcript isoforms in the chicken genome, we generated Nanopore
long-read sequencing data from 68 samples that encompassed 19 diverse tissues collected …

Combinatorial and machine learning approaches for improved somatic variant calling from formalin-fixed paraffin-embedded genome sequence data

DD Dodani, MH Nguyen, RD Morin, MA Marra… - Frontiers in …, 2022 - frontiersin.org
Formalin fixation of paraffin-embedded tissue samples is a well-established method for
preserving tissue and is routinely used in clinical settings. Although formalin-fixed, paraffin …