The tRNA identity landscape for aminoacylation and beyond

R Giegé, G Eriani - Nucleic Acids Research, 2023 - academic.oup.com
Abstract tRNAs are key partners in ribosome-dependent protein synthesis. This process is
highly dependent on the fidelity of tRNA aminoacylation by aminoacyl-tRNA synthetases …

Recent advances: molecular mechanism of RNA oxidation and its role in various diseases

Z Li, X Chen, Z Liu, W Ye, L Li, L Qian… - Frontiers in Molecular …, 2020 - frontiersin.org
Compared with the research on DNA damage, there are fewer studies on RNA damage, and
the damage mechanism remains mostly unknown. Recent studies have shown that RNA is …

Discovery of a novel class of boron-based antibacterials with activity against gram-negative bacteria

V Hernandez, T Crépin, A Palencia… - Antimicrobial agents …, 2013 - Am Soc Microbiol
Gram-negative bacteria cause approximately 70% of the infections in intensive care units. A
growing number of bacterial isolates responsible for these infections are resistant to …

Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya

A Nasir, KM Kim, G Caetano-Anolles - BMC Evolutionary Biology, 2012 - Springer
Background The discovery of giant viruses with genome and physical size comparable to
cellular organisms, remnants of protein translation machinery and virus-specific parasites …

Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility

G Caetano-Anollés, M Wang, D Caetano-Anollés - PLoS One, 2013 - journals.plos.org
The genetic code shapes the genetic repository. Its origin has puzzled molecular scientists
for over half a century and remains a long-standing mystery. Here we show that the origin of …

The coevolutionary roots of biochemistry and cellular organization challenge the RNA world paradigm

G Caetano-Anollés, MJ Seufferheld - Journal of Molecular Microbiology …, 2013 - karger.com
The origin and evolution of modern biochemistry and cellular structure is a complex problem
that has puzzled scientists for almost a century. While comparative, functional and structural …

Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code

SS Yadavalli, M Ibba - Nucleic acids research, 2013 - academic.oup.com
Mistranslation can follow two events during protein synthesis: production of non-cognate
amino acid: transfer RNA (tRNA) pairs by aminoacyl-tRNA synthetases (aaRSs) and …

Exploring the Substrate Range of Wild‐Type Aminoacyl‐tRNA Synthetases

C Fan, JML Ho, N Chirathivat, D Söll… - ChemBioChem, 2014 - Wiley Online Library
We tested the substrate range of four wild‐type E. coli aminoacyl‐tRNA synthetases
(AARSs) with a library of nonstandard amino acids (nsAAs). Although these AARSs could …

Leucyl-tRNA synthetase editing domain functions as a molecular rheostat to control codon ambiguity in Mycoplasma pathogens

L Li, A Palencia, T Lukk, Z Li… - Proceedings of the …, 2013 - National Acad Sciences
Mycoplasma leucyl-tRNA synthetases (LeuRSs) have been identified in which the
connective polypeptide 1 (CP1) amino acid editing domain that clears mischarged tRNAs …

Altering the enantioselectivity of tyrosyl-tRNA synthetase by insertion of a stereospecific editing domain

CJ Richardson, EA First - Biochemistry, 2016 - ACS Publications
Translation of mRNAs by the ribosome is stereospecific, with only l-amino acids being
incorporated into the nascent polypeptide chain. This stereospecificity results from the …