OCT4: dynamic DNA binding pioneers stem cell pluripotency

S Jerabek, F Merino, HR Schöler, V Cojocaru - Biochimica et Biophysica …, 2014 - Elsevier
OCT4 was discovered more than two decades ago as a transcription factor specific to early
embryonic development. Early studies with OCT4 were descriptive and looked at …

Quantitative single-cell RNA-seq with unique molecular identifiers

S Islam, A Zeisel, S Joost, G La Manno, P Zajac… - Nature …, 2014 - nature.com
Single-cell RNA sequencing (RNA-seq) is a powerful tool to reveal cellular heterogeneity,
discover new cell types and characterize tumor microevolution. However, losses in cDNA …

LIF-dependent signaling: new pieces in the Lego

ME Mathieu, C Saucourt, V Mournetas… - Stem cell reviews and …, 2012 - Springer
LIF, a member of the IL6 family of cytokine, displays pleiotropic effects on various cell types
and organs. Its critical role in stem cell models (eg: murine ES, human mesenchymal cells) …

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

Y Sasagawa, I Nikaido, T Hayashi, H Danno, KD Uno… - Genome biology, 2013 - Springer
Abstract Development of a highly reproducible and sensitive single-cell RNA sequencing
(RNA-seq) method would facilitate the understanding of the biological roles and underlying …

BASiCS: Bayesian analysis of single-cell sequencing data

CA Vallejos, JC Marioni… - PLoS computational …, 2015 - journals.plos.org
Single-cell mRNA sequencing can uncover novel cell-to-cell heterogeneity in gene
expression levels in seemingly homogeneous populations of cells. However, these …

Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells

T Kalmar, C Lim, P Hayward, S Muñoz-Descalzo… - PLoS …, 2009 - journals.plos.org
There is evidence that pluripotency of mouse embryonic stem (ES) cells is associated with
the activity of a network of transcription factors with Sox2, Oct4, and Nanog at the core. Using …

Zscan4 regulates telomere elongation and genomic stability in ES cells

M Zalzman, G Falco, LV Sharova, A Nishiyama… - Nature, 2010 - nature.com
Exceptional genomic stability is one of the hallmarks of mouse embryonic stem (ES) cells.
However, the genes contributing to this stability remain obscure. We previously identified …

Soft substrates promote homogeneous self-renewal of embryonic stem cells via downregulating cell-matrix tractions

F Chowdhury, Y Li, YC Poh, T Yokohama-Tamaki… - PloS one, 2010 - journals.plos.org
Maintaining undifferentiated mouse embryonic stem cell (mESC) culture has been a major
challenge as mESCs cultured in Leukemia Inhibitory Factor (LIF) conditions exhibit …

Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs

E Brookes, I de Santiago, D Hebenstreit, KJ Morris… - Cell stem cell, 2012 - cell.com
Polycomb repressor complexes (PRCs) are important chromatin modifiers fundamentally
implicated in pluripotency and cancer. Polycomb silencing in embryonic stem cells (ESCs) …

Epiblast stem cell subpopulations represent mouse embryos of distinct pregastrulation stages

DW Han, N Tapia, JY Joo, B Greber, MJ Araúzo-Bravo… - Cell, 2010 - cell.com
Embryonic stem cells (ESCs) comprise at least two populations of cells with divergent states
of pluripotency. Here, we show that epiblast stem cells (EpiSCs) also comprise two distinct …