[HTML][HTML] Live-cell imaging in the deep learning era

JW Pylvänäinen, E Gómez-de-Mariscal… - Current Opinion in Cell …, 2023 - Elsevier
Live imaging is a powerful tool, enabling scientists to observe living organisms in real time.
In particular, when combined with fluorescence microscopy, live imaging allows the …

Bridging live-cell imaging and next-generation cancer treatment

M Alieva, AKL Wezenaar, EJ Wehrens… - Nature Reviews Cancer, 2023 - nature.com
By providing spatial, molecular and morphological data over time, live-cell imaging can
provide a deeper understanding of the cellular and signalling events that determine cancer …

Defining the condensate landscape of fusion oncoproteins

S Tripathi, HK Shirnekhi, SD Gorman… - Nature …, 2023 - nature.com
Fusion oncoproteins (FOs) arise from chromosomal translocations in~ 17% of cancers and
are often oncogenic drivers. Although some FOs can promote oncogenesis by undergoing …

A strong quick-release biointerface in mussels mediated by serotonergic cilia-based adhesion

J Sivasundarampillai, L Youssef, T Priemel, S Mikulin… - Science, 2023 - science.org
The mussel byssus stem provides a strong and compact mechanically mismatched
biointerface between living tissue and a nonliving biopolymer. Yet, in a poorly understood …

Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations

AR Lederer, M Leonardi, L Talamanca… - Nature …, 2024 - nature.com
Across biological systems, cells undergo coordinated changes in gene expression, resulting
in transcriptome dynamics that unfold within a low-dimensional manifold. While low …

Kunitz-type protease inhibitor TFPI2 remodels stemness and immunosuppressive tumor microenvironment in glioblastoma

L Pang, M Dunterman, S Guo, F Khan, Y Liu… - Nature …, 2023 - nature.com
Glioblastoma (GBM) tumors consist of multiple cell populations, including self-renewing
glioblastoma stem cells (GSCs) and immunosuppressive microglia. Here we identified …

Phage-triggered reverse transcription assembles a toxic repetitive gene from a noncoding RNA

ME Wilkinson, D Li, A Gao, RK Macrae, F Zhang - Science, 2024 - science.org
Reverse transcription has frequently been co-opted for cellular functions and in prokaryotes
is associated with protection against viral infection, but the underlying mechanisms of …

Self-inspired learning for denoising live-cell super-resolution microscopy

L Qu, S Zhao, Y Huang, X Ye, K Wang, Y Liu, X Liu… - Nature …, 2024 - nature.com
Every collected photon is precious in live-cell super-resolution (SR) microscopy. Here, we
describe a data-efficient, deep learning-based denoising solution to improve diverse SR …

Molecular definition of the endogenous Toll-like receptor signalling pathways

D Fisch, T Zhang, H Sun, W Ma, Y Tan, SP Gygi… - Nature, 2024 - nature.com
Innate immune pattern recognition receptors, such as the Toll-like receptors (TLRs), are key
mediators of the immune response to infection and central to our understanding of health …

Dense 4D nanoscale reconstruction of living brain tissue

P Velicky, E Miguel, JM Michalska, J Lyudchik, D Wei… - Nature …, 2023 - nature.com
Abstract Three-dimensional (3D) reconstruction of living brain tissue down to an individual
synapse level would create opportunities for decoding the dynamics and structure–function …