Homeobox genes in cancers: from carcinogenesis to recent therapeutic intervention

Y Feng, T Zhang, Y Wang, M Xie, X Ji, X Luo… - Frontiers in …, 2021 - frontiersin.org
The homeobox (HOX) genes encoding an evolutionarily highly conserved family of
homeodomain-containing transcriptional factors are essential for embryogenesis and …

Focus on your locus with a massively parallel reporter assay

JC McAfee, JL Bell, O Krupa, N Matoba… - Journal of …, 2022 - Springer
A growing number of variants associated with risk for neurodevelopmental disorders have
been identified by genome-wide association and whole genome sequencing studies. As …

Acute depletion of CTCF rewires genome-wide chromatin accessibility

B Xu, H Wang, S Wright, J Hyle, Y Zhang, Y Shao… - Genome biology, 2021 - Springer
Background The transcription factor CTCF appears indispensable in defining topologically
associated domain boundaries and maintaining chromatin loop structures within these …

PAX5 epigenetically orchestrates CD58 transcription and modulates blinatumomab response in acute lymphoblastic leukemia

Y Li, T Moriyama, S Yoshimura, X Zhao, Z Li… - Science …, 2022 - science.org
Blinatumomab is an efficacious immunotherapeutic agent in B cell acute lymphoblastic
leukemia (B-ALL). However, the pharmacogenomic basis of leukemia response to …

False-positive IRESes from Hoxa9 and other genes resulting from errors in mammalian 5′ UTR annotations

C Akirtava, GE May… - Proceedings of the …, 2022 - National Acad Sciences
Hyperconserved genomic sequences have great promise for understanding core biological
processes. It has been recently proposed that scores of hyperconserved 5′ untranslated …

TBX20 improves contractility and mitochondrial function during direct human cardiac reprogramming

Y Tang, S Aryal, X Geng, X Zhou, VG Fast, J Zhang… - Circulation, 2022 - Am Heart Assoc
Background: Direct cardiac reprogramming of fibroblasts into cardiomyocytes has emerged
as a promising strategy to remuscularize injured myocardium. However, it is insufficient to …

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation

J Hyle, MN Djekidel, J Williams, S Wright, Y Shao, B Xu… - Genome Biology, 2023 - Springer
Background CTCF is a well-established chromatin architectural protein that also plays
various roles in transcriptional regulation. While CTCF biology has been extensively studied …

Molecular regulators of HOXA9 in acute myeloid leukemia

S Aryal, Y Zhang, S Wren, C Li, R Lu - The FEBS Journal, 2023 - Wiley Online Library
Dysregulation of the oncogenic transcription factor HOXA9 is a prominent feature for most
aggressive acute myeloid leukemia cases and a strong indicator of poor prognosis in …

Systematic characterization of the HOXA9 downstream targets in MLL-r leukemia by noncoding CRISPR screens

S Wright, X Zhao, W Rosikiewicz, S Mryncza… - Nature …, 2023 - nature.com
Accumulating evidence indicates that HOXA9 dysregulation is necessary and sufficient for
leukemic transformation and maintenance. However, it remains largely unknown how …

CRISPR screen identifies the role of RBBP8 in mediating unfolded protein response induced liver damage through regulating protein synthesis

H Wang, X Pan, X Xiang, Y Zhang, J Chen, S Wen… - Cell Death & …, 2023 - nature.com
Unfolded protein response (UPR) maintains the endoplasmic reticulum (ER) homeostasis,
survival, and physiological function of mammalian cells. However, how cells adapt to ER …