Protease signalling: the cutting edge

B Turk, D Turk, V Turk - The EMBO journal, 2012 - embopress.org
Protease research has undergone a major expansion in the last decade, largely due to the
extremely rapid development of new technologies, such as quantitative proteomics and in …

Granzyme B-induced apoptosis in cancer cells and its regulation

I Rousalova, E Krepela - International journal of …, 2010 - spandidos-publications.com
The granzyme B-induced cell death has been traditionally viewed as a primary mechanism
that is used by cytotoxic T lymphocytes (CTLs) and natural killer (NK) cells to eliminate …

Improved visualization of protein consensus sequences by iceLogo

N Colaert, K Helsens, L Martens, J Vandekerckhove… - Nature …, 2009 - nature.com
To the Editor: Large sequence-based datasets are often scanned for conserved sequence
patterns to extract useful biological information1. Sequence logos2 have been developed to …

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

O Kleifeld, A Doucet, U auf dem Keller, A Prudova… - Nature …, 2010 - nature.com
Effective proteome-wide strategies that distinguish the N-termini of proteins from the N-
termini of their protease cleavage products would accelerate identification of the substrates …

PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites

J Song, H Tan, AJ Perry, T Akutsu, GI Webb… - PloS one, 2012 - journals.plos.org
The ability to catalytically cleave protein substrates after synthesis is fundamental for all
forms of life. Accordingly, site-specific proteolysis is one of the most important post …

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates

O Kleifeld, A Doucet, A Prudova, M Gioia… - Nature protocols, 2011 - nature.com
Abstract Analysis of the sequence and nature of protein N termini has many applications.
Defining the termini of proteins for proteome annotation in the Human Proteome Project is of …

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics

A Prudova, U auf dem Keller, GS Butler… - Molecular & Cellular …, 2010 - ASBMB
Proteolysis is a major protein posttranslational modification that, by altering protein structure,
affects protein function and, by truncating the protein sequence, alters peptide signatures of …

Updated biological roles for matrix metalloproteinases and new “intracellular” substrates revealed by degradomics

GS Butler, CM Overall - Biochemistry, 2009 - ACS Publications
Shotgun proteomics techniques are conceptually unbiased, but data interpretation and
follow-up experiments are often constrained by dogma, established beliefs that are accepted …

Granzyme B in skin inflammation and disease

CT Turner, D Lim, DJ Granville - Matrix Biology, 2019 - Elsevier
Granzyme B (GzmB) is a serine protease emerging as an important mediator of skin injury,
inflammation and repair. Found at low levels in healthy skin, GzmB is dramatically elevated …

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

A Staes, F Impens, P Van Damme, B Ruttens… - Nature protocols, 2011 - nature.com
In recent years, procedures for selecting the N-terminal peptides of proteins with analysis by
mass spectrometry have been established to characterize protease-mediated cleavage and …