A biological sub-sequences detection using integrated BA-PSO based on infection propagation mechanism: Case study COVID-19

M Issa, AM Helmi, AH Elsheikh, M Abd Elaziz - Expert Systems with …, 2022 - Elsevier
The longest common consecutive subsequences (LCCS) play a vital role in revealing the
biological relationships between DNA/RNA sequences especially the newly discovered …

[PDF][PDF] A review of the smith-waterman gpu landscape

R Barnes - … Engineering and Computer Sciences University of …, 2020 - eecs.berkeley.edu
A key step in the assembly of genomes is the identification of locally optimal alignments
between small subsections of the genome. The Smith-Waterman algorithm provides an …

A scalable multiple pairwise protein sequence alignment acceleration using hybrid CPU–GPU approach

L Alawneh, MA Shehab, M Al-Ayyoub, Y Jararweh… - Cluster …, 2020 - Springer
Bioinformatics is an interdisciplinary field that applies trending techniques in information
technology, mathematics, and statistics in studying large biological data. Bioinformatics …

Efficient inter-device task scheduling schemes for multi-device co-processing of data-parallel kernels on heterogeneous systems

L Wan, W Zheng, X Yuan - IEEE Access, 2021 - ieeexplore.ieee.org
Heterogeneous systems consisting of multiple multi-core CPUs and many-core accelerators
have recently come into wide use, and more and more parallel applications are developed …

HCE: a runtime system for efficiently supporting heterogeneous cooperative execution

L Wan, W Zheng, X Yuan - IEEE Access, 2021 - ieeexplore.ieee.org
Heterogeneous systems with multiple different compute devices have come into common
use recently, and the heterogeneity of the compute device is mainly reflected in three …

Применение алгоритмов биоинформатики для обнаружения мутирующих кибератак

ДП Зегжда, МО Калинин, ВМ Крундышев… - Информатика и …, 2021 - ia.spcras.ru
Аннотация Функционал любой системы может быть представлен в виде совокупности
команд, которые приводят к изменению состояния системы. Задача обнаружения атаки …

HELIOS: High-speed sequence alignment in optics

E Maleki, S Akbari Rokn Abadi… - PLOS Computational …, 2022 - journals.plos.org
In response to the imperfections of current sequence alignment methods, originated from the
inherent serialism within their corresponding electrical systems, a few optical approaches for …

Mismatch-resistant intrusion detection with bioinspired suffix tree algorithm

H Cho, A Andreev, M Kalinin, D Moskvin… - Algorithms and Solutions …, 2022 - Springer
Signature-based intrusion detection is the fastest kind of the protection facility. It's work
principle is the matching of command sequences executed by the monitored system to the …

MASA-StarPU: Parallel sequence comparison with multiple scheduling policies and pruning

RA Lopes, S Thibault… - 2020 IEEE 32nd …, 2020 - ieeexplore.ieee.org
Sequence comparison tools based on the Smith-Waterman (SW) algorithm provide the
optimal result but have high execution times when the sequences compared are long, since …

Salsa: A domain specific architecture for sequence alignment

L Di Tucci, R Baghdadi, S Amarasinghe… - 2020 IEEE …, 2020 - ieeexplore.ieee.org
The explosion of genomic data is fostering research in fields such as personalized medicine
and agritech, raising the necessity of providing more performant, power-efficient and easy-to …