Macromolecular room temperature crystallography

M Fischer - Quarterly Reviews of Biophysics, 2021 - cambridge.org
X-ray crystallography enables detailed structural studies of proteins to understand and
modulate their function. Conducting crystallographic experiments at cryogenic temperatures …

Laboratory evolution of protein conformational dynamics

EC Campbell, GJ Correy, PD Mabbitt, AM Buckle… - Current Opinion in …, 2018 - Elsevier
Highlights•Laboratory directed evolution and ancestral reconstruction can facilitate study of
protein structural dynamics.•Advances in biophysical and computational techniques facilitate …

Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico

A Broom, RV Rakotoharisoa, MC Thompson… - Nature …, 2020 - nature.com
The creation of artificial enzymes is a key objective of computational protein design.
Although de novo enzymes have been successfully designed, these exhibit low catalytic …

Ensemble-function relationships to dissect mechanisms of enzyme catalysis

F Yabukarski, T Doukov, MM Pinney, JT Biel… - Science …, 2022 - science.org
Decades of structure-function studies have established our current extensive understanding
of enzymes. However, traditional structural models are snapshots of broader conformational …

C–N Bond Forming Radical Rebound Is the Enantioselectivity-Determining Step in P411-Catalyzed Enantioselective C(sp3)–H Amination: A Combined …

BK Mai, NM Neris, Y Yang, P Liu - Journal of the American …, 2022 - ACS Publications
Engineered metalloenzymes represent promising catalysts for stereoselective C–H
functionalization reactions. Recently, P450 enzymes have been evolved to allow for new-to …

Directed evolution mimics allosteric activation by stepwise tuning of the conformational ensemble

AR Buller, P Van Roye, JKB Cahn… - Journal of the …, 2018 - ACS Publications
Allosteric enzymes contain a wealth of catalytic diversity that remains distinctly underutilized
for biocatalysis. Tryptophan synthase is a model allosteric system and a valuable enzyme for …

Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme

MC Thompson, BA Barad, AM Wolff, H Sun Cho… - Nature …, 2019 - nature.com
Correlated motions of proteins are critical to function, but these features are difficult to
resolve using traditional structure determination techniques. Time-resolved X-ray methods …

New insights into the molecular mechanisms of glutaminase C inhibitors in cancer cells using serial room temperature crystallography

SK Milano, Q Huang, TTT Nguyen… - Journal of Biological …, 2022 - ASBMB
Cancer cells frequently exhibit uncoupling of the glycolytic pathway from the TCA cycle (ie,
the" Warburg effect") and as a result, often become dependent on their ability to increase …

[HTML][HTML] Advances in methods for atomic resolution macromolecular structure determination

MC Thompson, TO Yeates, JA Rodriguez - F1000Research, 2020 - ncbi.nlm.nih.gov
Recent technical advances have dramatically increased the power and scope of structural
biology. New developments in high-resolution cryo-electron microscopy, serial X-ray …

Uncovering protein ensembles: automated multiconformer model building for X-ray crystallography and cryo-EM

SA Wankowicz, A Ravikumar, S Sharma, BT Riley… - …, 2024 - pmc.ncbi.nlm.nih.gov
In their folded state, biomolecules exchange between multiple conformational states that are
crucial for their function. Traditional structural biology methods, such as X-ray …