Characterizing immune repertoires by high throughput sequencing: strategies and applications

JJA Calis, BR Rosenberg - Trends in immunology, 2014 - cell.com
As the key cellular effectors of adaptive immunity, T and B lymphocytes utilize specialized
receptors to recognize, respond to, and neutralize a diverse array of extrinsic threats. These …

[HTML][HTML] γδ T cell responses: How many ligands will it take till we know?

D Vermijlen, D Gatti, A Kouzeli, T Rus… - Seminars in cell & …, 2018 - Elsevier
Abstract γδ T cells constitute a sizeable and non-redundant fraction of the total T cell pool in
all jawed vertebrates, but in contrast to conventional αβ T cells they are not restricted by …

High-throughput pairing of T cell receptor α and β sequences

B Howie, AM Sherwood, AD Berkebile… - Science translational …, 2015 - science.org
The T cell receptor (TCR) protein is a heterodimer composed of an α chain and a β chain.
TCR genes undergo somatic DNA rearrangements to generate the diversity of T cell binding …

TCR sequencing facilitates diagnosis and identifies mature T cells as the cell of origin in CTCL

IR Kirsch, R Watanabe, JT O'Malley… - Science translational …, 2015 - science.org
Early diagnosis of cutaneous T cell lymphoma (CTCL) is difficult and takes on average 6
years after presentation, in part because the clinical appearance and histopathology of …

A fetal wave of human type 3 effector γδ cells with restricted TCR diversity persists into adulthood

L Tan, AS Fichtner, E Bruni, I Odak, I Sandrock… - Science …, 2021 - science.org
Accumulating evidence suggests that the mouse embryonic thymus produces distinct waves
of innate effector γδ T cells. However, it is unclear whether this process occurs similarly in …

High-throughput sequencing detects minimal residual disease in acute T lymphoblastic leukemia

D Wu, A Sherwood, JR Fromm, SS Winter… - Science translational …, 2012 - science.org
High-throughput sequencing (HTS) of lymphoid receptor genes is an emerging technology
that can comprehensively assess the diversity of the immune system. Here, we applied HTS …

Characterization of ascites-and tumor-infiltrating γδ T cells reveals distinct repertoires and a beneficial role in ovarian cancer

E Foord, LCM Arruda, A Gaballa, C Klynning… - Science Translational …, 2021 - science.org
The role of γδ T cells in antitumor immunity has been under investigation for the past two
decades, but little is known about their contribution to clinical outcomes in patients. Here, we …

Global patterns of antigen receptor repertoire disruption across adaptive immune compartments in COVID-19

M Joseph, Y Wu, R Dannebaum… - Proceedings of the …, 2022 - National Acad Sciences
Whereas pathogen-specific T and B cells are a primary focus of interest during infectious
disease, we have used COVID-19 to ask whether their emergence comes at a cost of …

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing

IV Zvyagin, MV Pogorelyy… - Proceedings of the …, 2014 - National Acad Sciences
Adaptive immunity in humans is provided by hypervariable Ig-like molecules on the surface
of B and T cells. The final set of these molecules in each organism is formed under the …

Fluctuating fitness shapes the clone-size distribution of immune repertoires

J Desponds, T Mora… - Proceedings of the …, 2016 - National Acad Sciences
The adaptive immune system relies on the diversity of receptors expressed on the surface of
B-and T cells to protect the organism from a vast amount of pathogenic threats. The …