Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

Antibiotic-resistant organisms establish reservoirs in new hospital built environments and are related to patient blood infection isolates

KV Sukhum, EP Newcomer, C Cass… - Communications …, 2022 - nature.com
Background Healthcare-associated infections due to antibiotic-resistant organisms pose an
acute and rising threat to critically ill and immunocompromised patients. To evaluate …

Applications of Primate Genetics for Conservation and Management

LI Oklander, ID Soto-Calderón - Annual Review of Anthropology, 2024 - annualreviews.org
Conservation genetics is the use of genetics to understand and mitigate the threats caused
by anthropogenic activities, including habitat loss and fragmentation, wildlife trafficking, and …

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis

L Hu, Z Xu, M Wang, R Fan, D Yuan, B Wu… - Nature …, 2019 - nature.com
Black pepper (Piper nigrum), dubbed the 'King of Spices' and 'Black Gold', is one of the most
widely used spices. Here, we present its reference genome assembly by integrating PacBio …

Trilobite evolutionary rates constrain the duration of the Cambrian explosion

JR Paterson, GD Edgecombe… - Proceedings of the …, 2019 - National Acad Sciences
Trilobites are often considered exemplary for understanding the Cambrian explosion of
animal life, due to their unsurpassed diversity and abundance. These biomineralized …

Genetic evidence for the origin of Aedes aegypti, the yellow fever mosquito, in the southwestern Indian Ocean

J Soghigian, A Gloria‐Soria, V Robert… - Molecular …, 2020 - Wiley Online Library
Aedes aegypti is among the best‐studied mosquitoes due to its critical role as a vector of
human pathogens and ease of laboratory rearing. Until now, this species was thought to …

Phylogenetic evidence reveals early Kra-Dai divergence and dispersal in the late Holocene

Y Tao, Y Wei, J Ge, Y Pan, W Wang, Q Bi… - Nature …, 2023 - nature.com
Studying language evolution brings a crucial perspective to bear on questions of human
prehistory. As the most linguistically diverse region on earth, East and Southeast Asia have …

MASCOT: parameter and state inference under the marginal structured coalescent approximation

NF Müller, D Rasmussen, T Stadler - Bioinformatics, 2018 - academic.oup.com
Motivation The structured coalescent is widely applied to study demography within and
migration between sub-populations from genetic sequence data. Current methods are either …

Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions

TL Jenkins, R Castilho, JR Stevens - PeerJ, 2018 - peerj.com
Background Comparative phylogeography enables the study of historical and evolutionary
processes that have contributed to shaping patterns of contemporary genetic diversity …