Functional horizontal gene transfer from bacteria to eukaryotes

F Husnik, JP McCutcheon - Nature Reviews Microbiology, 2018 - nature.com
Bacteria influence eukaryotic biology as parasitic, commensal or beneficial symbionts. Aside
from these organismal interactions, bacteria have also been important sources of new …

[HTML][HTML] Contamination detection in genomic data: more is not enough

L Cornet, D Baurain - Genome Biology, 2022 - Springer
The decreasing cost of sequencing and concomitant augmentation of publicly available
genomes have created an acute need for automated software to assess genomic …

[HTML][HTML] MUMmer4: A fast and versatile genome alignment system

G Marçais, AL Delcher, AM Phillippy… - PLoS computational …, 2018 - journals.plos.org
The MUMmer system and the genome sequence aligner nucmer included within it are
among the most widely used alignment packages in genomics. Since the last major release …

BlobTools: Interrogation of genome assemblies

DR Laetsch, ML Blaxter - F1000Research, 2017 - research.ed.ac.uk
The goal of many genome sequencing projects is to provide a complete representation of a
target genome (or genomes) as underpinning data for further analyses. However, it can be …

[HTML][HTML] Next-generation genome annotation: we still struggle to get it right

SL Salzberg - Genome biology, 2019 - Springer
While the genome sequencing revolution has led to the sequencing and assembly of many
thousands of new genomes, genome annotation still uses very nearly the same technology …

[HTML][HTML] Rapid and sensitive detection of genome contamination at scale with FCS-GX

A Astashyn, ES Tvedte, D Sweeney, V Sapojnikov… - Genome biology, 2024 - Springer
Assembled genome sequences are being generated at an exponential rate. Here we
present FCS-GX, part of NCBI's Foreign Contamination Screen (FCS) tool suite, optimized to …

[HTML][HTML] Tardigrades use intrinsically disordered proteins to survive desiccation

TC Boothby, H Tapia, AH Brozena, S Piszkiewicz… - Molecular cell, 2017 - cell.com
Tardigrades are microscopic animals that survive a remarkable array of stresses, including
desiccation. How tardigrades survive desiccation has remained a mystery for more than 250 …

[HTML][HTML] Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

T Hashimoto, DD Horikawa, Y Saito… - Nature …, 2016 - nature.com
Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade
species tolerate almost complete dehydration and exhibit extraordinary tolerance to various …

Cytochrome P450 diversity in the tree of life

DR Nelson - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2018 - Elsevier
Sequencing in all areas of the tree of life has produced> 300,000 cytochrome P450 (CYP)
sequences that have been mined and collected. Nomenclature has been assigned to> …

[HTML][HTML] The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide …

W Chen, DK Hasegawa, N Kaur, A Kliot, PV Pinheiro… - BMC biology, 2016 - Springer
Abstract Background The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is among the
100 worst invasive species in the world. As one of the most important crop pests and virus …