Machine learning-optimized targeted detection of alternative splicing

K Yang, N Islas, S Jewell, D Wu, A Jha… - Nucleic Acids …, 2024 - academic.oup.com
RNA sequencing (RNA-seq) is widely adopted for transcriptome analysis but has inherent
biases that hinder the comprehensive detection and quantification of alternative splicing. To …

Full-length transcriptomic analysis in murine and human heart reveals diversity of PGC-1α promoters and isoforms regulated distinctly in myocardial ischemia and …

D Oehler, A Spychala, A Gödecke, A Lang, N Gerdes… - BMC biology, 2022 - Springer
Background Peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PGC-
1α) acts as a transcriptional coactivator and regulates mitochondrial function. Various …

Transcriptome analysis of Sparidentex hasta larvae exposed to water-accommodated fraction of Kuwait crude oil

V Kumar, Q Karam, AB Shajan, S Al-Nuaimi… - Scientific Reports, 2024 - nature.com
Anthropogenic activities have been shown to significantly affect marine life. Water pollution
and oil spills are particularly deleterious to the fish population, especially during their larval …

Transcriptomic analysis of the Non-Obstructive Azoospermia (NOA) to address gene expression regulation in human testis

G Balagannavar, K Basavaraju, AK Bajpai… - Systems Biology in …, 2023 - Taylor & Francis
There is a need to understand the molecular basis of testes under Non-Obstructive
Azoospermia (NOA), a state of failed spermatogenesis. There has been a lack of attention to …

ExonSurfer: a web-tool to design primers at exon–exon junctions

P Monfort-Lanzas, EC Rusu, L Parrakova, CA Karg… - BMC genomics, 2024 - Springer
Background Reverse transcription quantitative PCR (RT-qPCR) with intercalating dyes is
one of the main techniques to assess gene expression levels used in basic and applied …

Effect of Listeria monocytogenes on Food and Water Sources in Buffaloes' Farms

SSN Mansour, HMM Abd El Khalek… - المجلة العربية …, 2022‎ - asajs.journals.ekb.eg
Listeria monocytogenes from Listeria genus, which as saprophytes, but causes systemic
infections as pathogenic bacteria. Listeria monocytogenes is widely spread in environment …