Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future

D Akhoundova, MA Rubin - Cancer Cell, 2022 - cell.com
Next-generation DNA sequencing technology has dramatically advanced clinical oncology
through the identification of therapeutic targets and molecular biomarkers, leading to the …

[HTML][HTML] Function and regulation of the PEA3 subfamily of ETS transcription factors in cancer

T Qi, Q Qu, G Li, J Wang, H Zhu, Z Yang… - American journal of …, 2020 - ncbi.nlm.nih.gov
The PEA3 subfamily is a subgroup of the E26 transformation-specific (ETS) family. Its
members, ETV1, ETV4, and ETV5, have been found to be overexpressed in multiple …

A compendium of promoter-centered long-range chromatin interactions in the human genome

I Jung, A Schmitt, Y Diao, AJ Lee, T Liu, D Yang… - Nature …, 2019 - nature.com
A large number of putative cis-regulatory sequences have been annotated in the human
genome, but the genes they control remain poorly defined. To bridge this gap, we generate …

Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ

G Della Chiara, F Gervasoni, M Fakiola… - Nature …, 2021 - nature.com
Cancer is characterized by pervasive epigenetic alterations with enhancer dysfunction
orchestrating the aberrant cancer transcriptional programs and transcriptional …

Emerging epigenomic landscapes of pancreatic cancer in the era of precision medicine

G Lomberk, N Dusetti, J Iovanna, R Urrutia - Nature communications, 2019 - nature.com
Genetic studies have advanced our understanding of pancreatic cancer at a mechanistic
and translational level. Genetic concepts and tools are increasingly starting to be applied to …

Identifying novel susceptibility genes for colorectal cancer risk from a transcriptome-wide association study of 125,478 subjects

X Guo, W Lin, W Wen, J Huyghe, S Bien, Q Cai… - Gastroenterology, 2021 - Elsevier
Background And Aims Susceptibility genes and the underlying mechanisms for the majority
of risk loci identified by genome-wide association studies (GWAS) for colorectal cancer …

Fine-mapping analysis including over 254,000 East Asian and European descendants identifies 136 putative colorectal cancer susceptibility genes

Z Chen, X Guo, R Tao, JR Huyghe, PJ Law… - Nature …, 2024 - nature.com
Genome-wide association studies (GWAS) have identified more than 200 common genetic
variants independently associated with colorectal cancer (CRC) risk, but the causal variants …

Prioritization of risk genes in colorectal cancer by integrative analysis of multi-omics data and gene networks

M Zhang, X Wang, N Yang, X Zhu, Z Lu, Y Cai… - Science China Life …, 2024 - Springer
Genome-wide association studies (GWASs) have identified over 140 colorectal cancer
(CRC)-associated loci; however, target genes at the majority of loci and underlying …

Chromosome‐scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome

W Hilliard, ML MacDonald… - Biotechnology and …, 2020 - Wiley Online Library
The Chinese hamster genome serves as a reference genome for the study of Chinese
hamster ovary (CHO) cells, the preferred host system for biopharmaceutical production …

A distal super-enhancer activates oncogenic ETS2 via recruiting MECOM in inflammatory bowel disease and colorectal cancer

Y Chen, Y Ying, M Wang, C Ma, M Jia, L Shi… - Cell Death & …, 2023 - nature.com
Abnormal activities of distal cis-regulatory elements (CREs) contribute to the initiation and
progression of cancer. Gain of super-enhancer (SE), a highly active distal CRE, is essential …