A guide to web tools to prioritize candidate genes

LC Tranchevent, FB Capdevila, D Nitsch… - Briefings in …, 2011 - academic.oup.com
Finding the most promising genes among large lists of candidate genes has been defined
as the gene prioritization problem. It is a recurrent problem in genetics in which genetic …

Genome sequencing data analysis for rare disease gene discovery

UKI Umlai, DK Bangarusamy, X Estivill… - Briefings in …, 2022 - academic.oup.com
Rare diseases occur in a smaller proportion of the general population, which is variedly
defined as less than 200 000 individuals (US) or in less than 1 in 2000 individuals (Europe) …

[HTML][HTML] DA DA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

S Erten, G Bebek, RM Ewing, M Koyutürk - BioData mining, 2011 - Springer
Background High-throughput molecular interaction data have been used effectively to
prioritize candidate genes that are linked to a disease, based on the observation that the …

Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence

SF Saccone, NL Saccone, GE Swan… - …, 2008 - academic.oup.com
Motivation: A challenging problem after a genome-wide association study (GWAS) is to
balance the statistical evidence of genotype–phenotype correlation with a priori evidence of …

[HTML][HTML] Linking genes to diseases: it's all in the data

N Tiffin, MA Andrade-Navarro, C Perez-Iratxeta - Genome Medicine, 2009 - Springer
Genome-wide association analyses on large patient cohorts are generating large sets of
candidate disease genes. This is coupled with the availability of ever-increasing genomic …

[HTML][HTML] Predicting diabetes mellitus genes via protein-protein interaction and protein subcellular localization information

X Tang, X Hu, X Yang, Y Fan, Y Li, W Hu, Y Liao… - BMC genomics, 2016 - Springer
Background Diabetes mellitus characterized by hyperglycemia as a result of insufficient
production of or reduced sensitivity to insulin poses a growing threat to the health of people …

GeneTIER: prioritization of candidate disease genes using tissue-specific gene expression profiles

A Antanaviciute, C Daly, LA Crinnion… - …, 2015 - academic.oup.com
Motivation: In attempts to determine the genetic causes of human disease, researchers are
often faced with a large number of candidate genes. Linkage studies can point to a genomic …

GPSy: a cross-species gene prioritization system for conserved biological processes—application in male gamete development

R Britto, O Sallou, O Collin, G Michaux… - Nucleic acids …, 2012 - academic.oup.com
We present gene prioritization system (GPSy), a cross-species gene prioritization system
that facilitates the arduous but critical task of prioritizing genes for follow-up functional …

Detection and interpretation of genomic structural variation in health and disease

G Vandeweyer, RF Kooy - Expert review of molecular diagnostics, 2013 - Taylor & Francis
Recent technological advances in the detection of genomic structural variation have
revolutionized the field of medical genetics. Genome-wide screening for copy-number …

ProSim: a method for prioritizing disease genes based on protein proximity and disease similarity

GU Ganegoda, Y Sheng, J Wang - BioMed research …, 2015 - Wiley Online Library
Predicting disease genes for a particular genetic disease is very challenging in
bioinformatics. Based on current research studies, this challenge can be tackled via network …