Anaerobic catabolism of aromatic compounds: a genetic and genomic view

M Carmona, MT Zamarro, B Blázquez… - Microbiology and …, 2009 - Am Soc Microbiol
Aromatic compounds belong to one of the most widely distributed classes of organic
compounds in nature, and a significant number of xenobiotics belong to this family of …

Genesis, effects and fates of repeats in prokaryotic genomes

TJ Treangen, AL Abraham, M Touchon… - FEMS microbiology …, 2009 - academic.oup.com
DNA repeats are causes and consequences of genome plasticity. Repeats are created by
intrachromosomal recombination or horizontal transfer. They are targeted by recombination …

RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

RHY Jiang, S Tripathy, F Govers… - Proceedings of the …, 2008 - National Acad Sciences
Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of
effectors identified in plant pathogenic Phytophthora species possess N-terminal motifs …

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

R Seshadri, L Adrian, DE Fouts, JA Eisen, AM Phillippy… - Science, 2005 - science.org
Dehalococcoides ethenogenes is the only bacterium known to reductively dechlorinate the
groundwater pollutants, tetrachloroethene (PCE) and trichloroethene, to ethene. Its …

A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1

V De Berardinis, D Vallenet, V Castelli… - Molecular systems …, 2008 - embopress.org
We have constructed a collection of single‐gene deletion mutants for all dispensable genes
of the soil bacterium Acinetobacter baylyi ADP1. A total of 2594 deletion mutants were …

Burkholderia thailandensis harbors two identical rhl gene clusters responsible for the biosynthesis of rhamnolipids

D Dubeau, E Déziel, DE Woods, F Lépine - BMC microbiology, 2009 - Springer
Background Rhamnolipids are surface active molecules composed of rhamnose and β-
hydroxydecanoic acid. These biosurfactants are produced mainly by Pseudomonas …

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

YJ Kang, KH Kim, S Shim, MY Yoon, S Sun, MY Kim… - BMC Plant …, 2012 - Springer
Background R genes are a key component of genetic interactions between plants and
biotrophic bacteria and are known to regulate resistance against bacterial invasion. The …

Genome-Wide Analysis and Expression Profiling of the Phenylalanine Ammonia-Lyase Gene Family in Solanum tuberosum

F Mo, L Li, C Zhang, C Yang, G Chen, Y Niu… - International Journal of …, 2022 - mdpi.com
Phenylalanine ammonia-lyase is one of the most widely studied enzymes in the plant
kingdom. It is a crucial pathway from primary metabolism to significant secondary …

Gene duplication as a major force driving the genome expansion in some giant viruses

TB Machado, ACR Picorelli, BL de Azevedo… - Journal of …, 2023 - Am Soc Microbiol
Giant viruses with their gigantic genomes are among the most intriguing components of the
virosphere. How these viruses attained such giant genomes remains unclear, despite …

Recurrent gene amplification and soft selective sweeps during evolution of multidrug resistance in malaria parasites

S Nair, D Nash, D Sudimack, A Jaidee… - Molecular biology …, 2007 - academic.oup.com
When selection is strong and beneficial alleles have a single origin, local reductions in
genetic diversity are expected. However, when beneficial alleles have multiple origins or …