Redundancy analysis: A Swiss Army Knife for landscape genomics

T Capblancq, BR Forester - Methods in Ecology and Evolution, 2021 - Wiley Online Library
Landscape genomics identifies how spatial and environmental factors structure the amount
and distribution of genetic variation among populations. Landscape genomic analyses have …

Genome–environment associations, an innovative tool for studying heritable evolutionary adaptation in orphan crops and wild relatives

AJ Cortés, F López-Hernández, MW Blair - Frontiers in Genetics, 2022 - frontiersin.org
Leveraging innovative tools to speed up prebreeding and discovery of genotypic sources of
adaptation from landraces, crop wild relatives, and orphan crops is a key prerequisite to …

Chromosome-scale assembly and annotation of the perennial ryegrass genome

I Nagy, E Veeckman, C Liu, MV Bel, K Vandepoele… - BMC genomics, 2022 - Springer
Background The availability of chromosome-scale genome assemblies is fundamentally
important to advance genetics and breeding in crops, as well as for evolutionary and …

Ultralong oxford nanopore reads enable the development of a reference-grade perennial ryegrass genome assembly

D Frei, E Veekman, D Grogg… - Genome biology and …, 2021 - academic.oup.com
Despite the progress made in DNA sequencing over the last decade, reconstructing
telomere-to-telomere genome assemblies of large and repeat-rich eukaryotic genomes is …

Redundancy analysis, genome‐wide association studies and the pigmentation of brown trout (Salmo trutta L.)

T Valette, M Leitwein, JM Lascaux… - Journal of Fish …, 2023 - Wiley Online Library
The association of molecular variants with phenotypic variation is a main issue in biology,
often tackled with genome‐wide association studies (GWAS). GWAS are challenging, with …

Genetic diversity and local adaption of alfalfa populations (Medicago sativa L.) under long-term grazing

H Wang, B Coulman, Y Bai, B Tarˈan, B Biligetu - Scientific Reports, 2023 - nature.com
Genomic information on alfalfa adaptation to long-term grazing is useful for alfalfa genetic
improvement. In this study, 14 alfalfa populations were collected from long-term grazing sites …

Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance

M Glombik, D Copetti, J Bartos, S Stoces… - The Plant …, 2021 - Wiley Online Library
Allopolyploidization entailing the merger of two distinct genomes in a single hybrid
organism, is an important process in plant evolution and a valuable tool in breeding …

Trait characterization of genetic resources reveals useful variation for the improvement of cultivated Nordic red clover

S Zanotto, A Palmé, Á Helgadóttir… - Journal of Agronomy …, 2021 - Wiley Online Library
Red clover (Trifolium pratense L.) is the most important forage legume in the Nordic region,
but its utilization is limited by poor persistency. The improvement of cultivated red clover can …

Fine‐scale spatial genetic structure in a locally abundant native bunchgrass (Achnatherum thurberianum) including distinct lineages revealed within seed transfer …

C Osuna‐Mascaró, AC Agneray… - Evolutionary …, 2023 - Wiley Online Library
Analyses of the factors shaping genetic variation in widespread plant species are important
for understanding the evolutionary history and local adaptation and have applied …

Annual and perennial Medicago show signatures of parallel adaptation to climate and soil in highly conserved genes

JL Blanco‐Pastor, IM Liberal, M Sakiroglu… - Molecular …, 2021 - Wiley Online Library
Human induced environmental change may require rapid adaptation of plant populations
and crops, but the genomic basis of environmental adaptation remain poorly understood …