Biotechnological Advancements and Begomovirus Management in Okra (Abelmoschus esculentus L.): Status and Perspectives
Despite the importance of okra, as one of the important vegetable crop, very little attention
has been paid to its genetic improvement using advanced biotechnological tools. The …
has been paid to its genetic improvement using advanced biotechnological tools. The …
RNA-seq assembly–are we there yet?
Transcriptomic sequence resources represent invaluable assets for research, in particular
for non-model species without a sequenced genome. To date, the Next Generation …
for non-model species without a sequenced genome. To date, the Next Generation …
Full‐length de novo assembly of RNA‐seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species
Next‐generation sequencing technologies allow an almost exhaustive survey of the
transcriptome, even in species with no available genome sequence. To produce a Unigene …
transcriptome, even in species with no available genome sequence. To produce a Unigene …
De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana
Background Nicotiana benthamiana has been widely used for transient gene expression
assays and as a model plant in the study of plant-microbe interactions, lipid engineering and …
assays and as a model plant in the study of plant-microbe interactions, lipid engineering and …
Combining Transcriptome Assemblies from Multiple De Novo Assemblers in the Allo-Tetraploid Plant Nicotiana benthamiana
Background Nicotiana benthamiana is an allo-tetraploid plant, which can be challenging for
de novo transcriptome assemblies due to homeologous and duplicated gene copies …
de novo transcriptome assemblies due to homeologous and duplicated gene copies …
De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism
Parasitic flowering plants are one of the most destructive agricultural pests and have major
impact on crop yields throughout the world. Being dependent on finding a host plant for …
impact on crop yields throughout the world. Being dependent on finding a host plant for …
Separating homeologs by phasing in the tetraploid wheat transcriptome
Background The high level of identity among duplicated homoeologous genomes in
tetraploid pasta wheat presents substantial challenges for de novo transcriptome assembly …
tetraploid pasta wheat presents substantial challenges for de novo transcriptome assembly …
Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome
Whereas de novo assemblies of RNA-Seq data are being published for a growing number of
species across the tree of life, there are currently no broadly accepted methods for …
species across the tree of life, there are currently no broadly accepted methods for …
Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
Hybridization and polyploidy followed by genome‐wide diploidization had a significant
impact on the diversification of land plants. The ancient At‐α whole‐genome duplication …
impact on the diversification of land plants. The ancient At‐α whole‐genome duplication …
Insights into the evolution of hydroxyproline-rich glycoproteins from 1000 plant transcriptomes
KL Johnson, AM Cassin, A Lonsdale… - Plant …, 2017 - academic.oup.com
The carbohydrate-rich cell walls of land plants and algae have been the focus of much
interest given the value of cell wall-based products to our current and future economies …
interest given the value of cell wall-based products to our current and future economies …