Circular analysis in systems neuroscience: the dangers of double dipping

N Kriegeskorte, WK Simmons, PSF Bellgowan… - Nature …, 2009 - nature.com
A neuroscientific experiment typically generates a large amount of data, of which only a
small fraction is analyzed in detail and presented in a publication. However, selection …

Controlling the familywise error rate in functional neuroimaging: a comparative review

T Nichols, S Hayasaka - Statistical methods in medical …, 2003 - journals.sagepub.com
Functional neuroimaging data embodies a massive multiple testing problem, where 100 000
correlated test statistics must be assessed. The familywise error rate, the chance of any false …

β-Amyloid accumulation in the human brain after one night of sleep deprivation

E Shokri-Kojori, GJ Wang, CE Wiers… - Proceedings of the …, 2018 - National Acad Sciences
The effects of acute sleep deprivation on β-amyloid (Aβ) clearance in the human brain have
not been documented. Here we used PET and 18F-florbetaben to measure brain Aβ burden …

Decoding subject-driven cognitive states with whole-brain connectivity patterns

WR Shirer, S Ryali, E Rykhlevskaia, V Menon… - Cerebral …, 2012 - academic.oup.com
Decoding specific cognitive states from brain activity constitutes a major goal of
neuroscience. Previous studies of brain-state classification have focused largely on …

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

AE Jaffe, P Murakami, H Lee, JT Leek… - International journal …, 2012 - academic.oup.com
Background During the past 5 years, high-throughput technologies have been successfully
used by epidemiology studies, but almost all have focused on sequence variation through …

Neurodegenerative diseases target large-scale human brain networks

WW Seeley, RK Crawford, J Zhou, BL Miller… - Neuron, 2009 - cell.com
During development, the healthy human brain constructs a host of large-scale, distributed,
function-critical neural networks. Neurodegenerative diseases have been thought to target …

A critical role for the right fronto-insular cortex in switching between central-executive and default-mode networks

D Sridharan, DJ Levitin… - Proceedings of the …, 2008 - National Acad Sciences
Cognitively demanding tasks that evoke activation in the brain's central-executive network
(CEN) have been consistently shown to evoke decreased activation (deactivation) in the …

Dissociable intrinsic connectivity networks for salience processing and executive control

WW Seeley, V Menon, AF Schatzberg… - Journal of …, 2007 - Soc Neuroscience
Variations in neural circuitry, inherited or acquired, may underlie important individual
differences in thought, feeling, and action patterns. Here, we used task-free connectivity …

Nonparametric permutation tests for functional neuroimaging: a primer with examples

TE Nichols, AP Holmes - Human brain mapping, 2002 - Wiley Online Library
Requiring only minimal assumptions for validity, nonparametric permutation testing provides
a flexible and intuitive methodology for the statistical analysis of data from functional …

Divergent network connectivity changes in behavioural variant frontotemporal dementia and Alzheimer's disease

J Zhou, MD Greicius, ED Gennatas, ME Growdon… - Brain, 2010 - academic.oup.com
Resting-state or intrinsic connectivity network functional magnetic resonance imaging
provides a new tool for mapping large-scale neural network function and dysfunction …