Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

S Ardui, A Ameur, JR Vermeesch… - Nucleic acids …, 2018 - academic.oup.com
Short read massive parallel sequencing has emerged as a standard diagnostic tool in the
medical setting. However, short read technologies have inherent limitations such as GC …

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa

CV Pulford, BM Perez-Sepulveda, R Canals… - Nature …, 2021 - nature.com
Bloodstream infections caused by nontyphoidal Salmonella are a major public health
concern in Africa, causing~ 49,600 deaths every year. The most common Salmonella …

Comparative analysis of extended-spectrum-β-lactamase CTX-M-65-producing Salmonella enterica serovar Infantis isolates from humans, food animals, and retail …

H Tate, JP Folster, CH Hsu, J Chen… - Antimicrobial Agents …, 2017 - Am Soc Microbiol
We sequenced the genomes of 10 Salmonella enterica serovar Infantis isolates containing
bla CTX-M-65 obtained from chicken, cattle, and human sources collected between 2012 …

GenomeTrakr proficiency testing for foodborne pathogen surveillance: an exercise from 2015

RE Timme, H Rand, M Sanchez Leon… - Microbial …, 2018 - microbiologyresearch.org
Pathogen monitoring is becoming more precise as sequencing technologies become more
affordable and accessible worldwide. This transition is especially apparent in the field of …

Pathogenome comparison and global phylogeny of Escherichia coli ST1485 strains

AM Hammad, N Gonzalez-Escalona, A El Tahan… - Scientific Reports, 2022 - nature.com
Escherichia coli ST1485 strains belong to the clinically important phylogroup F and have
disseminated worldwide in humans, animals, and the environment. Here, we elucidated the …

Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide

CV Pulford, BM Perez-Sepulveda… - Infection and …, 2019 - Am Soc Microbiol
In recent years nontyphoidal Salmonella has emerged as one of the pathogens most
frequently isolated from the bloodstream in humans. Only a small group of Salmonella …

Retrospective whole-genome sequencing analysis distinguished PFGE and drug-resistance-matched retail meat and clinical Salmonella isolates

AB Keefer, L Xiaoli, NM M'ikanatha, K Yao… - …, 2019 - microbiologyresearch.org
Non-typhoidal Salmonella is a leading cause of outbreak and sporadic-associated
foodborne illnesses in the United States. These infections have been associated with a …

Genome sequence analysis of 91 Salmonella Enteritidis isolates from mice caught on poultry farms in the mid 1990s

J Guard, G Cao, Y Luo, JD Baugher, S Davison, K Yao… - Genomics, 2020 - Elsevier
A total of 91 draft genome sequences were used to analyze isolates of Salmonella enterica
serovar Enteritidis obtained from feral mice caught on poultry farms in Pennsylvania. One …

Complete genome sequence of Salmonella enterica serovar Sendai shows H antigen convergence with S. Miami and recent divergence from S. Paratyphi A

Y Feng, E Lin, S Zou, CL Chen, CH Chiu - BMC genomics, 2019 - Springer
Background Salmonella enterica consists of over 2500 serovars and displays dichotomy in
disease manifestations and host range. Except for the enrichment of pseudogenes in …

Antibiotics susceptibility of quinolones against Salmonella spp. strains isolated and molecularly sequenced for gyrA gene

GP Macías-Farrera, RM de Oca Jiménez… - Microbial …, 2018 - Elsevier
Drug-resistant Salmonella is frequently detected in most parts of the world, and its rate of
resistance has increased significantly in recent years. However, this study aimed to evaluate …