HIV-1 adaptation to HLA: a window into virus–host immune interactions

JM Carlson, AQ Le, A Shahid, ZL Brumme - Trends in microbiology, 2015 - cell.com
HIV-1 develops specific mutations within its genome that allow it to escape detection by
human leukocyte antigen (HLA) class I-restricted immune responses, notably those of CD8+ …

HIV-1 vaccine immunogen design strategies

JK Mann, T Ndung'u - Virology journal, 2015 - Springer
An effective human immunodeficiency virus type 1 (HIV-1) vaccine is expected to have the
greatest impact on HIV-1 spread and remains a global scientific priority. Only one candidate …

Peptide trimming by endoplasmic reticulum aminopeptidases: Role of MHC class I binding and ERAP dimerization

I Evnouchidou, P van Endert - Human Immunology, 2019 - Elsevier
Presentation of short peptides, produced through intracellular proteolysis, by MHC class I
molecules (MHC-I) is the basis of adaptive immune surveillance and responses by cytolytic …

Selection of an HLA-C* 03: 04-restricted HIV-1 p24 gag sequence variant is associated with viral escape from KIR2DL3+ natural killer cells: data from an observational …

A Hölzemer, CF Thobakgale, CA Jimenez Cruz… - PLoS …, 2015 - journals.plos.org
Background Viruses can evade immune surveillance, but the underlying mechanisms are
insufficiently understood. Here, we sought to understand the mechanisms by which natural …

Evolutionary genetics of Mycobacterium tuberculosis and HIV-1:“the tortoise and the hare”

A Santos-Pereira, C Magalhães, PMM Araújo… - Microorganisms, 2021 - mdpi.com
The already enormous burden caused by Mycobacterium tuberculosis and Human
Immunodeficiency Virus type 1 (HIV-1) alone is aggravated by co-infection. Despite obvious …

[PDF][PDF] HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification

NC Kist, B Lambert, S Campbell, A Katzourakis… - Virus …, 2020 - academic.oup.com
Pathogen-driven selection and past interbreeding with archaic human lineages have
resulted in differences in human leukocyte antigen (HLA)-allele frequencies between …

Mother-to-child HIV transmission bottleneck selects for consensus virus with lower gag-protease-driven replication capacity

VL Naidoo, JK Mann, C Noble, E Adland… - Journal of …, 2017 - Am Soc Microbiol
In the large majority of cases, HIV infection is established by a single variant, and
understanding the characteristics of successfully transmitted variants is relevant to …

[PDF][PDF] Epitope length variants balance protective immune responses and viral escape in HIV-1 infection

P Pymm, S Tenzer, E Wee, M Weimershaus… - Cell reports, 2022 - cell.com
Cytotoxic T lymphocyte (CTL) and natural killer (NK) cell responses to a single optimal 10-
mer epitope (KK10) in the human immunodeficiency virus type-1 (HIV-1) protein p24Gag are …

Antigen processing and presentation in HIV infection

J Boucau, S Le Gall - Molecular immunology, 2019 - Elsevier
The presentation of virus-derived peptides by MHC molecules constitutes the earliest
signals for immune recognition by T cells. In HIV infection, immune responses elicited during …

Mapping the drivers of within-host pathogen evolution using massive data sets

DS Palmer, I Turner, S Fidler, J Frater… - Nature …, 2019 - nature.com
Differences among hosts, resulting from genetic variation in the immune system or
heterogeneity in drug treatment, can impact within-host pathogen evolution. Genetic …