Forest tree genomics: growing resources and applications

DB Neale, A Kremer - Nature Reviews Genetics, 2011 - nature.com
Over the past two decades, research in forest tree genomics has lagged behind that of
model and agricultural systems. However, genomic research in forest trees is poised to enter …

Toward kingdom-wide analyses of gene expression

I Julca, QW Tan, M Mutwil - Trends in Plant Science, 2023 - cell.com
Gene expression data for Archaeplastida are accumulating exponentially, with more than
300 000 RNA-sequencing (RNA-seq) experiments available for hundreds of species. The …

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

AJ Eckert, AD Bower… - Molecular …, 2010 - Wiley Online Library
Genetic variation is often arrayed in latitudinal or altitudinal clines, reflecting either
adaptation along environmental gradients, migratory routes, or both. For forest trees, climate …

Plant fiber formation: state of the art, recent and expected progress, and open questions

T Gorshkova, N Brutch, B Chabbert… - Critical Reviews in …, 2012 - Taylor & Francis
Plant fibers are one of the most important renewable resources, used as raw material in the
paper industry, and for various textiles and for composites. Fibers are structural components …

The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome

A Sjödin, NR Street, G Sandberg, P Gustafsson… - New …, 2009 - Wiley Online Library
Populus has become an important model plant system. However, utilization of the
increasingly extensive collection of genetics and genomics data created by the community is …

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two …

D Cohen, MB Bogeat-Triboulot, E Tisserant… - BMC genomics, 2010 - Springer
Background Comparative genomics has emerged as a promising means of unravelling the
molecular networks underlying complex traits such as drought tolerance. Here we assess …

Adventitious root formation in tree species: involvement of transcription factors

V Legué, A Rigal, RP Bhalerao - Physiologia plantarum, 2014 - Wiley Online Library
Adventitious rooting is an essential step in the vegetative propagation of economically
important horticultural and woody species. Populus has emerged as an experimental model …

The genomics of local adaptation in trees: are we out of the woods yet?

BM Lind, M Menon, CE Bolte, TM Faske… - Tree genetics & …, 2018 - Springer
There is substantial interest in uncovering the genetic basis of the traits underlying adaptive
responses in tree species, as this information will ultimately aid conservation and industrial …

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

E Rodgers-Melnick, SP Mane… - Genome …, 2012 - genome.cshlp.org
Comparative analysis of multiple angiosperm genomes has implicated gene duplication in
the expansion and diversification of many gene families. However, empirical data and theory …

Genomics of growth traits in forest trees

D Grattapaglia, C Plomion, M Kirst… - Current opinion in plant …, 2009 - Elsevier
Growth traits in trees are fundamental components of adaptation in a forest ecosystem and
of productivity in planted forests. A number of processes determine tree growth, which are …