Modified nucleic acids: replication, evolution, and next-generation therapeutics

K Duffy, S Arangundy-Franklin, P Holliger - Bmc Biology, 2020 - Springer
Modified nucleic acids, also called xeno nucleic acids (XNAs), offer a variety of advantages
for biotechnological applications and address some of the limitations of first-generation …

The mechanism of nonenzymatic template copying with imidazole‐activated nucleotides

T Walton, W Zhang, L Li, CP Tam… - Angewandte Chemie …, 2019 - Wiley Online Library
The emergence of the replication of RNA oligonucleotides was a critical step in the origin of
life. An important model for the study of nonenzymatic template copying, which would be a …

The virtual circular genome model for primordial RNA replication

L Zhou, D Ding, JW Szostak - Rna, 2021 - rnajournal.cshlp.org
We propose a model for the replication of primordial protocell genomes that builds upon
recent advances in the nonenzymatic copying of RNA. We suggest that the original …

Kinetic explanations for the sequence biases observed in the nonenzymatic copying of RNA templates

D Ding, L Zhou, C Giurgiu… - Nucleic Acids Research, 2022 - academic.oup.com
The identification of nonenzymatic pathways for nucleic acid replication is a key challenge in
understanding the origin of life. We have previously shown that nonenzymatic RNA primer …

Potentially prebiotic activation chemistry compatible with nonenzymatic RNA copying

SJ Zhang, D Duzdevich, JW Szostak - Journal of the American …, 2020 - ACS Publications
The nonenzymatic replication of ribonucleic acid (RNA) may have enabled the propagation
of genetic information during the origin of life. RNA copying can be initiated in the laboratory …

The emergence of RNA from the heterogeneous products of prebiotic nucleotide synthesis

SC Kim, DK O'Flaherty, C Giurgiu, L Zhou… - Journal of the …, 2021 - ACS Publications
Recent advances in prebiotic chemistry are beginning to outline plausible pathways for the
synthesis of the canonical ribonucleotides and their assembly into oligoribonucleotides …

Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying

D Ding, Z Fang, SC Kim, DK O'Flaherty… - Journal of the …, 2024 - ACS Publications
2-Thiouridine (s2U) is a nucleobase modification that confers enhanced efficiency and
fidelity both on modern tRNA codon translation and on nonenzymatic and ribozyme …

[HTML][HTML] Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life

AS Tupper, PG Higgs - Journal of Theoretical Biology, 2021 - Elsevier
It is likely that RNA replication began non-enzymatically, and that polymerases were later
selected to speed up the process. We consider replication mechanisms in modern viruses …

Towards a prebiotic chemoton–nucleotide precursor synthesis driven by the autocatalytic formose reaction

QP Tran, R Yi, AC Fahrenbach - Chemical Science, 2023 - pubs.rsc.org
The formose reaction is often cited as a prebiotic source of sugars and remains one of the
most plausible forms of autocatalysis on the early Earth. Herein, we investigated how …

Catalytic Metal Ion–Substrate Coordination during Nonenzymatic RNA Primer Extension

Z Fang, LT Pazienza, J Zhang, CP Tam… - Journal of the …, 2024 - ACS Publications
Nonenzymatic template-directed RNA copying requires catalysis by divalent metal ions. The
primer extension reaction involves the attack of the primer 3′-hydroxyl on the adjacent …