mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …

Mass-spectrometric exploration of proteome structure and function

R Aebersold, M Mann - Nature, 2016 - nature.com
Numerous biological processes are concurrently and coordinately active in every living cell.
Each of them encompasses synthetic, catalytic and regulatory functions that are, almost …

Excessive cell growth causes cytoplasm dilution and contributes to senescence

GE Neurohr, RL Terry, J Lengefeld, M Bonney… - cell, 2019 - cell.com
Cell size varies greatly between cell types, yet within a specific cell type and growth
condition, cell size is narrowly distributed. Why maintenance of a cell-type specific cell size …

On the dependency of cellular protein levels on mRNA abundance

Y Liu, A Beyer, R Aebersold - Cell, 2016 - cell.com
The question of how genomic information is expressed to determine phenotypes is of central
importance for basic and translational life science research and has been studied by …

Integrated proteogenomic characterization of human high-grade serous ovarian cancer

H Zhang, T Liu, Z Zhang, SH Payne, B Zhang… - Cell, 2016 - cell.com
To provide a detailed analysis of the molecular components and underlying mechanisms
associated with ovarian cancer, we performed a comprehensive mass-spectrometry-based …

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

G Finak, A McDavid, M Yajima, J Deng, V Gersuk… - Genome biology, 2015 - Springer
Single-cell transcriptomics reveals gene expression heterogeneity but suffers from
stochastic dropout and characteristic bimodal expression distributions in which expression is …

Ribosomopathies: There's strength in numbers

EW Mills, R Green - Science, 2017 - science.org
BACKGROUND Ribosomopathies are a heterogeneous group of human disorders that are
in some cases known, and in other cases suspected, to result from ribosome dysfunction …

The quantitative and condition-dependent Escherichia coli proteome

A Schmidt, K Kochanowski, S Vedelaar, E Ahrné… - Nature …, 2016 - nature.com
Measuring precise concentrations of proteins can provide insights into biological processes.
Here we use efficient protein extraction and sample fractionation, as well as state-of-the-art …

Cell type–and brain region–resolved mouse brain proteome

K Sharma, S Schmitt, CG Bergner, S Tyanova… - Nature …, 2015 - nature.com
Brain transcriptome and connectome maps are being generated, but an equivalent effort on
the proteome is currently lacking. We performed high-resolution mass spectrometry–based …

Convolutional networks for supervised mining of molecular patterns within cellular context

I de Teresa-Trueba, SK Goetz, A Mattausch… - Nature …, 2023 - nature.com
Cryo-electron tomograms capture a wealth of structural information on the molecular
constituents of cells and tissues. We present DeePiCt (deep picker in context), an open …