Situating ecology as a big-data science: current advances, challenges, and solutions
Ecology has joined a world of big data. Two complementary frameworks define big data:
data that exceed the analytical capacities of individuals or disciplines or the “Four Vs” axes …
data that exceed the analytical capacities of individuals or disciplines or the “Four Vs” axes …
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
Abstract Uncultivated Bacteria and Archaea account for the vast majority of species on Earth,
but obtaining their genomes directly from the environment, using shotgun sequencing, has …
but obtaining their genomes directly from the environment, using shotgun sequencing, has …
A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases
Despite remarkable strides in microbiome research, the viral component of the microbiome
has generally presented a more challenging target than the bacteriome. This gap persists …
has generally presented a more challenging target than the bacteriome. This gap persists …
Cenote-Taker 2 democratizes virus discovery and sequence annotation
Viruses, despite their great abundance and significance in biological systems, remain
largely mysterious. Indeed, the vast majority of the perhaps hundreds of millions of viral …
largely mysterious. Indeed, the vast majority of the perhaps hundreds of millions of viral …
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
The rate of progress in human neurosciences is limited by the inability to easily apply a wide
range of analysis methods to the plethora of different datasets acquired in labs around the …
range of analysis methods to the plethora of different datasets acquired in labs around the …
Plant Reactome: a knowledgebase and resource for comparative pathway analysis
Abstract Plant Reactome (https://plantreactome. gramene. org) is an open-source,
comparative plant pathway knowledgebase of the Gramene project. It uses Oryza sativa …
comparative plant pathway knowledgebase of the Gramene project. It uses Oryza sativa …
Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q
W Xie, C Chen, Z Yang, L Guo, X Yang, D Wang… - …, 2017 - academic.oup.com
The sweetpotato whitefly Bemisia tabaci is a highly destructive agricultural and ornamental
crop pest. It damages host plants through both phloem feeding and vectoring plant …
crop pest. It damages host plants through both phloem feeding and vectoring plant …
Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
Hydraulic fracturing is one of the industrial processes behind the surging natural gas output
in the United States. This technology inadvertently creates an engineered microbial …
in the United States. This technology inadvertently creates an engineered microbial …
[HTML][HTML] Tools for building de novo transcriptome assembly
The availability of RNA-Seq method allows researchers to capture the spatial or temporal
profile of transcriptomes from various types of biological samples. The transcriptome data …
profile of transcriptomes from various types of biological samples. The transcriptome data …
Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface
Bacteria of the phylum Verrucomicrobia are prevalent and are particularly common in soil
and freshwater environments. Their cosmopolitan distribution and reported capacity for …
and freshwater environments. Their cosmopolitan distribution and reported capacity for …