Spectroscopic studies of protein folding: linear and nonlinear methods

AL Serrano, MM Waegele, F Gai - Protein Science, 2012 - Wiley Online Library
Although protein folding is a simple outcome of the underlying thermodynamics, arriving at a
quantitative and predictive understanding of how proteins fold nevertheless poses huge …

Translation of Diverse Aramid- and 1,3-Dicarbonyl-peptides by Wild Type Ribosomes in Vitro

O Ad, KS Hoffman, AG Cairns, AL Featherston… - ACS central …, 2019 - ACS Publications
Here, we report that wild type Escherichia coli ribosomes accept and elongate precharged
initiator tRNAs acylated with multiple benzoic acids, including aramid precursors, as well as …

Dioxin and related compound detection: Perspectives for optical monitoring

B Patrizi, M Siciliani de Cumis, S Viciani… - International Journal of …, 2019 - mdpi.com
Dioxins and related compounds are environmental xenobiotics that are dangerous to human
life, due to the accumulation and persistence in the environment and in the food chain …

Identifying the coiled-coil triple helix structure of β-peptide nanofibers at atomic resolution

AJ Christofferson, ZS Al-Garawi, N Todorova, J Turner… - ACS …, 2018 - ACS Publications
Peptide self-assembly represents a powerful bottom-up approach to the fabrication of
nanomaterials. β3-Peptides are non-natural peptides composed entirely of β-amino acids …

Understanding the amide-II vibrations in β-peptides

J Zhao, J Wang - The Journal of Physical Chemistry B, 2015 - ACS Publications
In this work, the vibrational characteristics of the amide-II modes in β-peptides in five helical
conformations, namely, 8-, 10-, 12-, 14-, and 10/12-helices, have been examined …

Probing Local Environments with the Infrared Probe: l-4-Nitrophenylalanine

EE Smith, BY Linderman, AC Luskin… - The Journal of Physical …, 2011 - ACS Publications
The genetic incorporation of unnatural amino acids (UAAs) with high efficiency and fidelity is
a powerful tool for the study of protein structure and dynamics with site-specificity in a …

Uncovering the sensitivity of Amide-II vibration to peptide–ion interactions

J Zhao, J Wang - The Journal of Physical Chemistry B, 2016 - ACS Publications
In this work, linear infrared spectroscopy was used to examine the effect of salt on the amide-
II mode in a model β-peptide (N-ethylpropionamide, NEPA) in its deuterated form, to reveal …

General applicable frequency map for the amide-I mode in β-peptides

K Cai, F Du, X Zheng, J Liu, R Zheng… - The Journal of …, 2016 - ACS Publications
In this work, a general applicable amide-I vibrational frequency map (GA map) for β-peptides
in a number of common solvents was constructed, based on a peptide derivative, N …

[HTML][HTML] Quest for new generation biocompatible materials: tailoring β-peptide structure and interactions via synergy of experiments and modelling

MI Aguilar, I Yarovsky - Journal of Molecular Biology, 2024 - Elsevier
Peptide-based self-assembly has been used to produce a wide range of nanostructures.
While most of these systems involve self-assembly of α-peptides, more recently β-peptides …

Importance of polarization and charge transfer effects to model the infrared spectra of peptides in solution

F Ingrosso, G Monard, M Hamdi Farag… - Journal of Chemical …, 2011 - ACS Publications
We present a study of the infrared spectrum of N-methyl acetamide (NMA) performed by
using molecular dynamics (MD) with a quantum electronic Hamiltonian. A recently …