Harnessing taxonomically diverse and metabolically versatile genus Paracoccus for bioplastic synthesis and xenobiotic biodegradation

A Puri, A Bajaj, Y Singh, R Lal - Journal of Applied Microbiology, 2022 - academic.oup.com
The genus Paracoccus represents a taxonomically diverse group comprising more than 80
novel species isolated from various pristine and polluted environments. The species are …

[HTML][HTML] Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses

Z Chen, DL Erickson, J Meng - Genomics, 2021 - Elsevier
Oxford Nanopore sequencing has been widely used to achieve complete genomes of
bacterial pathogens. However, the error rates of Oxford Nanopore long reads are high …

Microbial signatures in amniotic fluid at preterm birth and association with bronchopulmonary dysplasia

B Staude, S Gschwendtner, T Frodermann… - Respiratory …, 2023 - Springer
Background Microbiome dysbiosis can have long-lasting effects on our health and induce
the development of various diseases. Bronchopulmonary dysplasia (BPD) is a multifactorial …

Effects of seaweed fertilizer on enzyme activities, metabolic characteristics, and bacterial communities during maize straw composting

G Zhou, X Qiu, J Zhang, C Tao - Bioresource technology, 2019 - Elsevier
The objective of this study was to investigate microbial responses when seaweed fertilizer
was added to maize straw compost. The metabolic characteristics and bacterial communities …

A Wild Rice Rhizobacterium Burkholderia cepacia BRDJ Enhances Nitrogen Use Efficiency in Rice

Z Li, AR Henawy, AA Halema, Q Fan… - International Journal of …, 2022 - mdpi.com
Rice domestication has dramatically improved its agronomic traits, albeit with unavoidable
significantly reduced genetic diversity. Dongxiang common wild rice, the wild rice species …

MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets

A Gupta, AS Malwe, GN Srivastava, P Thoudam… - BMC …, 2022 - Springer
Bacteria can exceptionally evolve and develop pathogenic features making it crucial to
determine novel pathogenic proteins for specific therapeutic interventions. Therefore, we …

The blood microbiome and its association to cardiovascular disease mortality: case-cohort study

G Lawrence, I Midtervoll, SO Samuelsen… - BMC Cardiovascular …, 2022 - Springer
Background Little is known about the association between bacterial DNA in human blood
and the risk of cardiovascular disease (CVD) mortality. Methods A case-cohort study was …

Metaproteomic analysis of an oral squamous cell carcinoma dataset suggests diagnostic potential of the mycobiome

S He, R Chakraborty, S Ranganathan - International journal of molecular …, 2023 - mdpi.com
Oral squamous cell carcinoma (OSCC) is the most common head and neck malignancy, with
an estimated 5-year survival rate of only 40–50%, largely due to late detection and …

Mucosal immunity and microbiota change in the rainbow trout (Oncorhynchus mykiss) gills after being challenged with infectious hematopoietic necrosis virus

P Tongsri, G Cheng, Z Huang, Z Wang, F Dong… - Fish & Shellfish …, 2023 - Elsevier
Respiratory structures are crucial for vertebrate survival, as they serve not only to perform
gas-exchange processes but also as entry points for opportunistic pathogens. Previous …

Characterization of the bacterial microbiome of Swedish ticks through 16S rRNA amplicon sequencing of whole ticks and of individual tick organs

G Grandi, G Chiappa, K Ullman, PE Lindgren… - Parasites & …, 2023 - Springer
Background The composition of the microbial flora associated with ixodid ticks has been
studied in several species, revealing the importance of geographical origin, developmental …