Multi-synchronization and other patterns of multi-rhythmicity in oscillatory biological systems

A Goldbeter, J Yan - Interface Focus, 2022 - royalsocietypublishing.org
While experimental and theoretical studies have established the prevalence of rhythmic
behaviour at all levels of biological organization, less common is the coexistence between …

Patient-specific Boolean models of signalling networks guide personalised treatments

A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …

An optimal Bayesian intervention policy in response to unknown dynamic cell stimuli

SH Hosseini, M Imani - Information Sciences, 2024 - Elsevier
Interventions in gene regulatory networks (GRNs) aim to restore normal functions of cells
experiencing abnormal behavior, such as uncontrolled cell proliferation. The dynamic …

[HTML][HTML] Personalization of logical models with multi-omics data allows clinical stratification of patients

J Béal, A Montagud, P Traynard, E Barillot… - Frontiers in …, 2019 - frontiersin.org
Logical models of cancer pathways are typically built by mining the literature for relevant
experimental observations. They are usually generic as they apply for large cohorts of …

Dynamics of P53 in response to DNA damage: Mathematical modeling and perspective

T Sun, J Cui - Progress in biophysics and molecular biology, 2015 - Elsevier
Cells are constantly challenged by intrinsic and extrinsic signals. DNA damage denotes a
serious threat to cellular survival due to its extensive destroy to genomic integrity …

Control of birhythmicity through conjugate self-feedback: Theory and experiment

D Biswas, T Banerjee, J Kurths - Physical Review E, 2016 - APS
Birhythmicity arises in several physical, biological, and chemical systems. Although many
control schemes have been proposed for various forms of multistability, only a few exist for …

Control of birhythmicity: a self-feedback approach

D Biswas, T Banerjee, J Kurths - Chaos: An Interdisciplinary Journal of …, 2017 - pubs.aip.org
Birhythmicity occurs in many natural and artificial systems. In this paper, we propose a self-
feedback scheme to control birhythmicity. To establish the efficacy and generality of the …

Space-dependent intermittent feedback can control birhythmicity

D Biswas, T Mandal, P Sharathi Dutta… - … Journal of Nonlinear …, 2023 - pubs.aip.org
Birhythmicity is evident in many nonlinear systems, which include physical and biological
systems. In some living systems, birhythmicity is necessary for response to the varying …

Numerical simulation of piecewise-linear models of gene regulatory networks using complementarity systems

V Acary, H De Jong, B Brogliato - Physica D: Nonlinear Phenomena, 2014 - Elsevier
Gene regulatory networks control the response of living cells to changes in their
environment. A class of piecewise-linear (PWL) models, which capture the switch-like …

Multi-rhythmicity generated by coupling two cellular rhythms

J Yan, A Goldbeter - Journal of the Royal Society …, 2019 - royalsocietypublishing.org
The cell cycle and the circadian clock represent two major cellular rhythms, which are
coupled because the circadian clock governs the synthesis of several proteins of the …