Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell

JJ Tyson, KC Chen, B Novak - Current opinion in cell biology, 2003 - Elsevier
The physiological responses of cells to external and internal stimuli are governed by genes
and proteins interacting in complex networks whose dynamical properties are impossible to …

Perfect adaptation in biology

MH Khammash - Cell Systems, 2021 - cell.com
A distinctive feature of many biological systems is their ability to adapt to persistent stimuli or
disturbances that would otherwise drive them away from a desirable steady state. The …

Interstitial dendritic cell guidance by haptotactic chemokine gradients

M Weber, R Hauschild, J Schwarz, C Moussion… - Science, 2013 - science.org
Directional guidance of cells via gradients of chemokines is considered crucial for
embryonic development, cancer dissemination, and immune responses. Nevertheless, the …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

[HTML][HTML] Defining network topologies that can achieve biochemical adaptation

W Ma, A Trusina, H El-Samad, WA Lim, C Tang - Cell, 2009 - cell.com
Many signaling systems show adaptation—the ability to reset themselves after responding to
a stimulus. We computationally searched all possible three-node enzyme network …

Reverse engineering of biological complexity

ME Csete, JC Doyle - science, 2002 - science.org
Advanced technologies and biology have extremely different physical implementations, but
they are far more alike in systems-level organization than is widely appreciated. Convergent …

Physical models of collective cell motility: from cell to tissue

BA Camley, WJ Rappel - Journal of physics D: Applied …, 2017 - singtest.iopscience.iop.org
In this article, we review physics-based models of collective cell motility. We discuss a range
of techniques at different scales, ranging from models that represent cells as simple self …

Mechanotaxis directs Pseudomonas aeruginosa twitching motility

MJ Kühn, L Talà, YF Inclan, R Patino… - Proceedings of the …, 2021 - National Acad Sciences
The opportunistic pathogen Pseudomonas aeruginosa explores surfaces using twitching
motility powered by retractile extracellular filaments called type IV pili (T4P). Single cells …

Collective cell migration: a physics perspective

V Hakim, P Silberzan - Reports on Progress in Physics, 2017 - iopscience.iop.org
Cells have traditionally been viewed either as independently moving entities or as
somewhat static parts of tissues. However, it is now clear that in many cases, multiple cells …