[HTML][HTML] Nearest template prediction: a single-sample-based flexible class prediction with confidence assessment

Y Hoshida - PloS one, 2010 - journals.plos.org
Gene-expression signature-based disease classification and clinical outcome prediction has
not been widely introduced in clinical medicine as initially expected, mainly due to the lack …

Machine learning for biomarker identification in cancer research–developments toward its clinical application

Z Jagga, D Gupta - Personalized medicine, 2015 - Future Medicine
The patterns identified from the systematically collected molecular profiles of patient tumor
samples, along with clinical metadata, can assist personalized treatments for effective …

Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?

X Robin, N Turck, A Hainard, F Lisacek… - Expert review of …, 2009 - Taylor & Francis
A large number of biomarkers have been discovered over the past few years using
proteomics techniques. Unfortunately, most of them are neither specific nor sensitive enough …

[图书][B] Batch effects and noise in microarray experiments: sources and solutions

A Scherer - 2009 - Wiley Online Library
High-content, high-density long or short oligonucleotide microarrays for simultaneous
measurement of redundancy of RNA species are nowadays widely used for hypothesis …

[HTML][HTML] Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data

E Glaab, J Bacardit, JM Garibaldi, N Krasnogor - PloS one, 2012 - journals.plos.org
Microarray data analysis has been shown to provide an effective tool for studying cancer
and genetic diseases. Although classical machine learning techniques have successfully …

An empirical assessment of validation practices for molecular classifiers

PJ Castaldi, IJ Dahabreh… - Briefings in …, 2011 - academic.oup.com
Proposed molecular classifiers may be overfit to idiosyncrasies of noisy genomic and
proteomic data. Cross-validation methods are often used to obtain estimates of classification …

[HTML][HTML] A two‑microRNA signature as a potential biomarker for early gastric cancer

G Zheng, Y Xiong, W Xu, Y Wang… - Oncology …, 2014 - spandidos-publications.com
Gastric cancer (GC) is one of the most common malignant tumors worldwide. No
fundamental improvements in the five‑year survival rates of patients with GC have been …

[HTML][HTML] Classification of microarrays; synergistic effects between normalization, gene selection and machine learning

J Önskog, E Freyhult, M Landfors, P Rydén… - BMC …, 2011 - Springer
Background Machine learning is a powerful approach for describing and predicting classes
in microarray data. Although several comparative studies have investigated the relative …

A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery

OP Watson, I Cortes-Ciriano, AR Taylor… - …, 2019 - academic.oup.com
Motivation Artificial intelligence, trained via machine learning (eg neural nets, random
forests) or computational statistical algorithms (eg support vector machines, ridge …

Biomarker guidelines for high-dimensional genomic studies in transplantation: adding method to the madness

SM Kurian, T Whisenant, V Mas, R Heilman… - …, 2017 - journals.lww.com
The rapid expansion of high dimensional “omic” technologies and their rapidly falling costs
have ushered in the era of precision medicine. However, large data sets are required for the …