Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

An optimized software and hardware digital implementation of two widely used DNA
sequence alignment algorithms based on lookup table (LUT) is illustrated in this study …

In order to tackle the programming challenges related to heterogeneous computing, Intel
recently introduced oneAPI, which is a new programming environment that allows code …

In computational biology, biological database search has been playing a very important role.
Since the COVID-19 outbreak, it has provided significant help in identifying common …

A key step in the assembly of genomes is the identification of locally optimal alignments
between small subsections of the genome. The Smith-Waterman algorithm provides an …

Many common document formats on the Internet are text‐only such as email (MIME) and the
Web (HTML, JavaScript, JSON, and XML). To include images or executable code in these …

Epistasis is a phenomenon in which a phenotype outcome is determined by the interaction
of genetic variation at two or more loci and it cannot be attributed to the additive combination …

New High-Performance Computing architectures have been recently developed for
commercial central processing unit (CPU). Yet, that has not improved the execution time of …

The comparison of genomic sequences plays a key role in determining the structural and
functional relationships between genes. This comparison is carried out by identifying the …

The main contribution of this paper is to present an efficient multicore CPU implementation
of convolution-pooling computation in convolutional neural networks (CNNs). Since the …