Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

Enhancing genetic gain through genomic selection: from livestock to plants

Y Xu, X Liu, J Fu, H Wang, J Wang, C Huang… - Plant …, 2020 - cell.com
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …

The modern plant breeding triangle: optimizing the use of genomics, phenomics, and enviromics data

J Crossa, R Fritsche-Neto… - Frontiers in plant …, 2021 - frontiersin.org
Continued increases in genetic gain demonstrate the success of established public and
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …

[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …

[HTML][HTML] Genomic selection: A breakthrough technology in rice breeding

Y Xu, K Ma, Y Zhao, X Wang, K Zhou, G Yu, C Li, P Li… - The Crop Journal, 2021 - Elsevier
Rice (Oryza sativa) provides a staple food source for more than half the world population.
However, the current pace of rice breeding in yield growth is insufficient to meet the food …

Multi-environment genomic prediction of plant traits using deep learners with dense architecture

A Montesinos-López… - G3: Genes …, 2018 - academic.oup.com
Genomic selection is revolutionizing plant breeding and therefore methods that improve
prediction accuracy are useful. For this reason, active research is being conducted to build …

Hybrid breeding of rice via genomic selection

Y Cui, R Li, G Li, F Zhang, T Zhu… - Plant biotechnology …, 2020 - Wiley Online Library
Hybrid breeding is the main strategy for improving productivity in many crops, especially in
rice and maize. Genomic hybrid breeding is a technology that uses whole‐genome markers …

Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

G Costa-Neto, R Fritsche-Neto, J Crossa - Heredity, 2021 - nature.com
Modern whole-genome prediction (WGP) frameworks that focus on multi-environment trials
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …

Bayesian genomic prediction with genotype× environment interaction kernel models

J Cuevas, J Crossa… - G3: Genes …, 2017 - academic.oup.com
The phenomenon of genotype× environment (G× E) interaction in plant breeding decreases
selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction …

Plant breeding for intercropping in temperate field crop systems: a review

VM Moore, B Schlautman, S Fei, LM Roberts… - Frontiers in Plant …, 2022 - frontiersin.org
Monoculture cropping systems currently dominate temperate agroecosystems. However,
intercropping can provide valuable benefits, including greater yield stability, increased total …