Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects

PH Degnan, AB Lazarus, JJ Wernegreen - Genome research, 2005 - genome.cshlp.org
The distinct lifestyle of obligately intracellular bacteria can alter fundamental forces that drive
and constrain genome change. In this study, sequencing the 792-kb genome of …

Genome evolution of Buchnera aphidicola (Gammaproteobacteria): Insights into strand compositional asymmetry, codon usage bias, and phylogenetic implications

H Ding, J Gao, J Yang, S Zhang, S Han, R Yi… - International Journal of …, 2023 - Elsevier
Taxa of Buchnera aphidicola (hereafter “Buchnera”) are mutualistic intracellular symbionts of
aphids, known for their remarkable biological traits such as genome reduction, strand …

Translational selection is ubiquitous in prokaryotes

F Supek, N Škunca, J Repar, K Vlahoviček… - PLoS genetics, 2010 - journals.plos.org
Codon usage bias in prokaryotic genomes is largely a consequence of background
substitution patterns in DNA, but highly expressed genes may show a preference towards …

Synonymous codon usage analysis of thirty two mycobacteriophage genomes

S Hassan, V Mahalingam… - Advances in …, 2009 - Wiley Online Library
Synonymous codon usage of protein coding genes of thirty two completely sequenced
mycobacteriophage genomes was studied using multivariate statistical analysis. One of the …

Analysis of synonymous codon usage in the UL24 gene of duck enteritis virus

R Jia, A Cheng, M Wang, H Xin, Y Guo, D Zhu, X Qi… - Virus genes, 2009 - Springer
The analysis on codon usage bias of UL24 gene of duck enteritis virus (DEV) may improve
our understanding of the evolution and pathogenesis of DEV and provide a basis for …

Factors influencing synonymous codon and amino acid usage biases in Mimivirus

K Sau, SK Gupta, S Sau, SC Mandal, TC Ghosh - Biosystems, 2006 - Elsevier
Synonymous codon and amino acid usage biases have been investigated in 903 Mimivirus
protein-coding genes in order to understand the architecture and evolution of Mimivirus …

The impact of selection at the amino acid level on the usage of synonymous codons

P Błażej, D Mackiewicz, M Wnętrzak… - G3: Genes, Genomes …, 2017 - academic.oup.com
There are two main forces that affect usage of synonymous codons: directional mutational
pressure and selection. The effectiveness of protein translation is usually considered as the …

The implication of life style on codon usage patterns and predicted highly expressed genes for three Frankia genomes

A Sen, S Sur, AK Bothra, DR Benson… - Antonie Van …, 2008 - Springer
Frankia are nitrogen-fixing actinomycetes that form a symbiotic association with over 200
species of woody dicotyledonous plants. Recently, three Frankia genomes were completely …

Codon Usages of Genes on Chromosome, and Surprisingly, Genes in Plasmid are Primarily Affected by Strand-specific Mutational Biases in Lawsonia intracellularis

FB Guo, JBO Yuan - DNA research, 2009 - academic.oup.com
In this study, the factors driving genome-wide patterns of codon usages in Lawsonia
intracellularis genome are determined. For genes on the chromosome of the bacterium, it is …

[HTML][HTML] Characterization of codon usage bias in the dUTPase gene of duck enteritis virus

L Zhao, A Cheng, M Wang, G Yuan, M Cai - Progress in natural science, 2008 - Elsevier
A comparative analysis of the codon usage bias in the newly discovered dUTPase gene
(Assigned Accession No.: DQ486149) of the duck enteritis virus (DEV) and the dUTPase …