Deep learning for plant genomics and crop improvement
Our era has witnessed tremendous advances in plant genomics, characterized by an
explosion of high-throughput techniques to identify multi-dimensional genome-wide …
explosion of high-throughput techniques to identify multi-dimensional genome-wide …
To bind or not to bind: how Auxin Response Factors select their target genes
J Rienstra, J Hernández-García… - Journal of Experimental …, 2023 - academic.oup.com
Most plant growth and development processes are regulated in one way or another by
auxin. The best-studied mechanism by which auxin exerts its regulatory effects is through …
auxin. The best-studied mechanism by which auxin exerts its regulatory effects is through …
Massively parallel assays and quantitative sequence–function relationships
JB Kinney, DM McCandlish - Annual review of genomics and …, 2019 - annualreviews.org
Over the last decade, a rich variety of massively parallel assays have revolutionized our
understanding of how biological sequences encode quantitative molecular phenotypes …
understanding of how biological sequences encode quantitative molecular phenotypes …
Deciphering transcriptional regulators of banana fruit ripening by regulatory network analysis
JF Kuang, CJ Wu, YF Guo, D Walther… - Plant biotechnology …, 2021 - Wiley Online Library
Fruit ripening is a critical phase in the production and marketing of fruits. Previous studies
have indicated that fruit ripening is a highly coordinated process, mainly regulated at the …
have indicated that fruit ripening is a highly coordinated process, mainly regulated at the …
[HTML][HTML] Modern plant breeding techniques in crop improvement and genetic diversity: from molecular markers and gene editing to artificial intelligence—A critical …
With the development of new technologies in recent years, researchers have made
significant progress in crop breeding. Modern breeding differs from traditional breeding …
significant progress in crop breeding. Modern breeding differs from traditional breeding …
Transcriptional and post-transcriptional controls for tuning gene expression in plants
Plant biotechnologists seek to modify plants through genetic reprogramming, but our ability
to precisely control gene expression in plants is still limited. Here, we review transcription …
to precisely control gene expression in plants is still limited. Here, we review transcription …
Deep learning-empowered crop breeding: intelligent, efficient and promising
Crop breeding is one of the main approaches to increase crop yield and improve crop
quality. However, the breeding process faces challenges such as complex data, difficulties …
quality. However, the breeding process faces challenges such as complex data, difficulties …
Every cloud has a silver lining: how abiotic stresses affect gene expression in plant-pathogen interactions
M Zarattini, M Farjad, A Launay… - Journal of …, 2021 - academic.oup.com
Current environmental and climate changes are having a pronounced influence on the
outcome of plant–pathogen interactions, further highlighting the fact that abiotic stresses …
outcome of plant–pathogen interactions, further highlighting the fact that abiotic stresses …
AUXIN RESPONSE FACTOR 18–HISTONE DEACETYLASE 6 module regulates floral organ identity in rose (Rosa hybrida)
J Chen, Y Li, Y Li, Y Li, Y Wang, C Jiang… - Plant …, 2021 - academic.oup.com
The phytohormone auxin plays a pivotal role in floral meristem initiation and gynoecium
development, but whether and how auxin controls floral organ identity remain largely …
development, but whether and how auxin controls floral organ identity remain largely …
Frontiers and techniques in plant gene regulation
Understanding plant gene regulation has been a priority for generations of plant scientists.
However, due to its complex nature, the regulatory code governing plant gene expression …
However, due to its complex nature, the regulatory code governing plant gene expression …