Ribosome biogenesis in disease: new players and therapeutic targets

L Jiao, Y Liu, XY Yu, X Pan, Y Zhang, J Tu… - … and Targeted Therapy, 2023 - nature.com
The ribosome is a multi-unit complex that translates mRNA into protein. Ribosome
biogenesis is the process that generates ribosomes and plays an essential role in cell …

Genomic regulation of transcription and RNA processing by the multitasking Integrator complex

SA Welsh, A Gardini - Nature Reviews Molecular Cell Biology, 2023 - nature.com
In higher eukaryotes, fine-tuned activation of protein-coding genes and many non-coding
RNAs pivots around the regulated activity of RNA polymerase II (Pol II). The Integrator …

Transfer RNAs as dynamic and critical regulators of cancer progression

AM Pinzaru, SF Tavazoie - Nature Reviews Cancer, 2023 - nature.com
Transfer RNAs (tRNAs) have been historically viewed as non-dynamic adaptors that decode
the genetic code into proteins. Recent work has uncovered dynamic regulatory roles for …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

SG Landt, GK Marinov, A Kundaje… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-
seq) has become a valuable and widely used approach for mapping the genomic location of …

Mapping and analysis of chromatin state dynamics in nine human cell types

J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh… - Nature, 2011 - nature.com
Chromatin profiling has emerged as a powerful means of genome annotation and detection
of regulatory activity. The approach is especially well suited to the characterization of non …

A dual program for translation regulation in cellular proliferation and differentiation

H Gingold, D Tehler, NR Christoffersen, MM Nielsen… - Cell, 2014 - cell.com
A dichotomous choice for metazoan cells is between proliferation and differentiation.
Measuring tRNA pools in various cell types, we found two distinct subsets, one that is …

[HTML][HTML] The histone deacetylase SIRT6 is a tumor suppressor that controls cancer metabolism

C Sebastián, BMM Zwaans, DM Silberman, M Gymrek… - Cell, 2012 - cell.com
Reprogramming of cellular metabolism is a key event during tumorigenesis. Despite being
known for decades (Warburg effect), the molecular mechanisms regulating this switch …

DNMT1-interacting RNAs block gene-specific DNA methylation

A Di Ruscio, AK Ebralidze, T Benoukraf, G Amabile… - Nature, 2013 - nature.com
DNA methylation was first described almost a century ago; however, the rules governing its
establishment and maintenance remain elusive. Here we present data demonstrating that …

Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity? Which compound to choose? How to evaluate its activity?

O Bensaude - Transcription, 2011 - Taylor & Francis
This review deals first with general questions: how to evaluate transcription inhibition,
describe changes in nuclear structure due to transcription inhibition, report on genes that are …

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

L Song, Z Zhang, LL Grasfeder, AP Boyle… - Genome …, 2011 - genome.cshlp.org
The human body contains thousands of unique cell types, each with specialized functions.
Cell identity is governed in large part by gene transcription programs, which are determined …