Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery

C Stutzmann, J Peng, Z Wu, C Savoie, I Sirois… - Cell Reports …, 2023 - cell.com
The identification of tumor-specific antigens (TSAs) is critical for developing effective cancer
immunotherapies. Mass spectrometry (MS)-based immunopeptidomics has emerged as a …

Benchmarking bioinformatics pipelines in data-independent acquisition mass spectrometry for immunopeptidomics

M Shahbazy, SH Ramarathinam, PT Illing… - Molecular & Cellular …, 2023 - ASBMB
Immunopeptidomes are the peptide repertoires bound by the molecules encoded by the
major histocompatibility complex [human leukocyte antigen (HLA) in humans]. These HLA …

New insights and approaches for analyses of immunopeptidomes

PT Illing, SH Ramarathinam, AW Purcell - Current Opinion in Immunology, 2022 - Elsevier
Human leucocyte antigen (HLA) molecules play a key role in health and disease by
presenting antigen to T-lymphocytes for immunosurveillance. Immunopeptidomics involves …

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines

KA Kovalchik, DJ Hamelin, P Kubiniok… - Nature …, 2024 - nature.com
Next-generation T-cell-directed vaccines for COVID-19 focus on establishing lasting T-cell
immunity against current and emerging SARS-CoV-2 variants. Precise identification of …

Integrating Machine Learning-Enhanced Immunopeptidomics and SARS-CoV-2 Population-Scale Analyses Unveils Novel Antigenic Features for Next-Generation …

E Caron, K Kovalchik, D Hamelin, P Kubiniok… - 2024 - researchsquare.com
Next-generation T-cell-directed vaccines for COVID-19 aim to induce durable T-cell
immunity against circulating and future hypermutated SARS-CoV-2 variants. Mass …