The microbial nitrogen-cycling network

MMM Kuypers, HK Marchant, B Kartal - Nature Reviews Microbiology, 2018 - nature.com
Nitrogen is an essential component of all living organisms and the main nutrient limiting life
on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric …

Global nitrogen cycle: critical enzymes, organisms, and processes for nitrogen budgets and dynamics

X Zhang, BB Ward, DM Sigman - Chemical reviews, 2020 - ACS Publications
Nitrogen (N) is used in many of life's fundamental biomolecules, and it is also a participant in
environmental redox chemistry. Biogeochemical processes control the amount and form of N …

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem

YJ Chen, PM Leung, JL Wood, SK Bay… - The ISME …, 2021 - academic.oup.com
Ecological theory suggests that habitat disturbance differentially influences distributions of
habitat generalist and specialist species. While well-established for macroorganisms, this …

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

MG Pachiadaki, E Sintes, K Bergauer, JM Brown… - Science, 2017 - science.org
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …

Charting the complexity of the marine microbiome through single-cell genomics

MG Pachiadaki, JM Brown, J Brown, O Bezuidt… - Cell, 2019 - cell.com
Marine bacteria and archaea play key roles in global biogeochemistry. To improve our
understanding of this complex microbiome, we employed single-cell genomics and a …

Processes and microorganisms involved in the marine nitrogen cycle: knowledge and gaps

S Pajares, R Ramos - Frontiers in Marine Science, 2019 - frontiersin.org
Nitrogen (N) is a key element for life in the oceans. It controls primary productivity in many
parts of the global ocean, consequently playing a crucial role in the uptake of atmospheric …

Linking metagenomics to aquatic microbial ecology and biogeochemical cycles

HP Grossart, R Massana, KD McMahon… - Limnology and …, 2020 - Wiley Online Library
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …

Genomes OnLine Database (GOLD) v. 6: data updates and feature enhancements

S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Genomes Online Database (GOLD)(https://gold. jgi. doe. gov) is a manually
curated data management system that catalogs sequencing projects with associated …

Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series

YC Yeh, JA Fuhrman - ISME communications, 2022 - academic.oup.com
Community dynamics are central in microbial ecology, yet we lack studies comparing
diversity patterns among marine protists and prokaryotes over depth and multiple years …

The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments

Y Nishimura, S Yoshizawa - Scientific Data, 2022 - nature.com
Marine microorganisms are immensely diverse and play fundamental roles in global
geochemical cycling. Recent metagenome-assembled genome studies, with particular …