Recent trends in biocatalysis engineering

A Illanes, A Cauerhff, L Wilson, GR Castro - Bioresource technology, 2012 - Elsevier
During the last 30years the scope of biocatalysis has been expanding due to the advances
in several technological fields. Diverse techniques as structural enzyme improvement (eg …

Computer simulations of enzyme catalysis: methods, progress, and insights

A Warshel - Annual review of biophysics and biomolecular …, 2003 - annualreviews.org
▪ Abstract Understanding the action of enzymes on an atomistic level is one of the important
aims of modern biophysics. This review describes the state of the art in addressing this …

Acetylcholinesterase: mechanism of catalysis and inhibition

V Tougu - … Medicinal Chemistry-Central Nervous System Agents, 2001 - ingentaconnect.com
Recent advances in the study of the catalytic properties of acetylcholinesterases have been
reviewed. The main biological function of this enzyme is the fast termination of impulse …

Why are proteins charged? Networks of charge–charge interactions in proteins measured by charge ladders and capillary electrophoresis

I Gitlin, JD Carbeck… - Angewandte Chemie …, 2006 - Wiley Online Library
Almost all proteins contain charged amino acids. While the function in catalysis or binding of
individual charges in the active site can often be identified, it is less clear how to assign …

Chemical basis for enzyme catalysis

TC Bruice, SJ Benkovic - Biochemistry, 2000 - ACS Publications
Some half-century ago Pauling (1, 2) proposed that the lowering of the activation energy in
enzyme catalysis stems from the enzyme's affinity for the transition state exceeding it's …

Catalytic proficiency: the unusual case of OMP decarboxylase

BG Miller, R Wolfenden - Annual review of biochemistry, 2002 - annualreviews.org
▪ Abstract Enzymes are called upon to differ greatly in the difficulty of the tasks that they
perform. The catalytic proficiency of an enzyme can be evaluated by comparing the second …

Structure-based activity prediction for an enzyme of unknown function

JC Hermann, R Marti-Arbona, AA Fedorov, E Fedorov… - Nature, 2007 - nature.com
With many genomes sequenced, a pressing challenge in biology is predicting the function of
the proteins that the genes encode. When proteins are unrelated to others of known activity …

Divergence and convergence in enzyme evolution

MY Galperin, EV Koonin - Journal of Biological Chemistry, 2012 - ASBMB
Comparative analysis of the sequences of enzymes encoded in a variety of prokaryotic and
eukaryotic genomes reveals convergence and divergence at several levels. Functional …

Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic “snapshots” of intermediate states

W Wang, HS Cho, R Kim, J Jancarik, H Yokota… - Journal of molecular …, 2002 - Elsevier
Phosphoserine phosphatase (PSP) is a member of a large class of enzymes that catalyze
phosphoester hydrolysis using a phosphoaspartate–enzyme intermediate. PSP is a likely …

Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5′-monophosphate decarboxylase catalysis

S Rindfleisch, M Krull, J Uranga, T Schmidt… - Nature Catalysis, 2022 - nature.com
The origins of enzyme catalysis have been attributed to both transition-state stabilization as
well as ground-state destabilization of the substrate. For the latter paradigm, the enzyme …