KM Ruff, RV Pappu - Journal of molecular biology, 2021 - Elsevier
Accurate predictions of the three-dimensional structures of proteins from their amino acid sequences have come of age. AlphaFold, a deep learning-based approach to protein …
Predicting the binding structure of a small molecule ligand to a protein--a task known as molecular docking--is critical to drug design. Recent deep learning methods that treat …
Protein structures can provide invaluable information, both for reasoning about biological processes and for enabling interventions such as structure-based drug development or …
Most proteins fold into 3D structures that determine how they function and orchestrate the biological processes of the cell. Recent developments in computational methods for protein …
Intrinsically disordered proteins and protein regions (IDPs/IDRs) exist without a single well- defined conformation. They carry out important biological functions with multifaceted roles …
Identification of intrinsic disorder in proteins relies in large part on computational predictors, which demands that their accuracy should be high. Since intrinsic disorder carries out a …
The MobiDB database (URL: https://mobidb. org/) is a knowledge base of intrinsically disordered proteins. MobiDB aggregates disorder annotations derived from the literature …
The AlphaFold Protein Structure Database contains predicted structures for millions of proteins. For the majority of human proteins that contain intrinsically disordered regions …
Intrinsically disordered proteins and protein regions make up a substantial fraction of many proteomes in which they play a wide variety of essential roles. A critical first step in …