Interferon regulatory factor 1 (IRF1) and anti-pathogen innate immune responses

H Feng, YB Zhang, JF Gui, SM Lemon… - PLoS …, 2021 - journals.plos.org
The eponymous member of the interferon regulatory factor (IRF) family, IRF1, was originally
identified as a nuclear factor that binds and activates the promoters of type I interferon …

Absence of a simple code: how transcription factors read the genome

M Slattery, T Zhou, L Yang, ACD Machado… - Trends in biochemical …, 2014 - cell.com
Transcription factors (TFs) influence cell fate by interpreting the regulatory DNA within a
genome. TFs recognize DNA in a specific manner; the mechanisms underlying this …

Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis

T Kehrer, A Cupic, C Ye, S Yildiz, M Bouhaddou… - Cell Host & Microbe, 2023 - cell.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) encodes several proteins
that inhibit host interferon responses. Among these, ORF6 antagonizes interferon signaling …

Critical role of cytosolic DNA and its sensing adaptor STING in aortic degeneration, dissection, and rupture

W Luo, Y Wang, L Zhang, P Ren, C Zhang, Y Li… - Circulation, 2020 - Am Heart Assoc
Background: Sporadic aortic aneurysm and dissection (AAD), caused by progressive aortic
smooth muscle cell (SMC) loss and extracellular matrix degradation, is a highly lethal …

Origins of specificity in protein-DNA recognition

R Rohs, X Jin, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

IRF7: activation, regulation, modification and function

S Ning, JS Pagano, GN Barber - Genes & Immunity, 2011 - nature.com
Abstract Interferon regulatory factor 7 (IRF7) was originally identified in the context of Epstein–
Barr virus (EBV) infection, and has since emerged as the crucial regulator of type I …

Affinity-optimizing enhancer variants disrupt development

F Lim, JJ Solvason, GE Ryan, SH Le, GA Jindal… - Nature, 2024 - nature.com
Enhancers control the location and timing of gene expression and contain the majority of
variants associated with disease,–. The ZRS is arguably the most well-studied vertebrate …

An atomic model of the interferon-β enhanceosome

D Panne, T Maniatis, SC Harrison - Cell, 2007 - cell.com
Transcriptional activation of the interferon-β (IFN-β) gene requires assembly of an
enhanceosome containing ATF-2/c-Jun, IRF-3/IRF-7, and NFκB. These factors bind …

[HTML][HTML] Regulation of IRF3 activation in human antiviral signaling pathways

MAL Hamrashdi, G Brady - Biochemical Pharmacology, 2022 - Elsevier
The interferon regulatory factor (IRF) family of transcription factors play a vital role in the
human innate antiviral immune responses with production of interferons (IFNs) as a hallmark …

The enhanceosome

D Panne - Current opinion in structural biology, 2008 - Elsevier
The interferon-β (IFN-β) enhanceosome is a paradigm for understanding the role of
transcription factor complexes in eukaryotic signal integration. Recent structural studies …