A comprehensive genomic analysis of Chinese indigenous ningxiang pigs: genomic breed compositions, runs of homozygosity, and beyond

S Yin, Z Li, F Yang, H Guo, Q Zhao, Y Zhang… - International Journal of …, 2023 - mdpi.com
Ningxiang pigs are a renowned indigenous pig breed in China, known for their meat quality,
disease resistance, and environmental adaptability. In recent decades, consumer demand …

Population structure and breed identification of Chinese indigenous sheep breeds using whole genome SNPs and InDels

C Zhao, D Wang, C Yang, Y Chen, J Teng… - Genetics Selection …, 2024 - Springer
Background Accurate breed identification is essential for the conservation and sustainable
use of indigenous farm animal genetic resources. In this study, we evaluated the …

Aquaculture Molecular Breeding Platform (AMBP): a comprehensive web server for genotype imputation and genetic analysis in aquaculture

Q Zeng, B Zhao, H Wang, M Wang, M Teng… - Nucleic Acids …, 2022 - academic.oup.com
It is of vital importance to understand the population structure, dissect the genetic bases of
performance traits, and make proper strategies for selection in breeding programs. However …

SNP panels for the estimation of dairy breed proportion and parentage assignment in African crossbred dairy cattle

NZ Gebrehiwot, EM Strucken, K Marshall… - Genetics Selection …, 2021 - Springer
Background Understanding the relationship between genetic admixture and phenotypic
performance is crucial for the optimization of crossbreeding programs. The use of small sets …

Development of a genomic tool for breed assignment by comparison of different classification models: Application to three local cattle breeds

H Wilmot, J Bormann, H Soyeurt… - Journal of Animal …, 2022 - Wiley Online Library
Assignment of individual cattle to a specific breed can often not rely on pedigree information.
This is especially the case for local breeds for which the development of genomic …

CattleAssigner: a framework for accurate assignment of individuals to cattle lineages and populations using minimum informative markers

SF Ahmad, D Hassan, A Kumar, GK Gaur, T Dutt… - … and Electronics in …, 2024 - Elsevier
Assigning individual animals to their respective breeds, populations or lineages has
immense significance in the evolutionary analyses of global cattle populations besides …

Interacting proteins, polymorphisms and the susceptibility of animals to SARS-CoV-2

JT Hancock, RC Rouse, E Stone, A Greenhough - Animals, 2021 - mdpi.com
Simple Summary COVID-19 is the disease caused by a coronavirus: SARS-CoV-2. The
disease was declared by WHO in March 2020 as a pandemic and is still affecting countries …

[PDF][PDF] Exploring unknown parent groups and metafounders in single-step genomic best linear unbiased prediction: Insights from a simulated cattle population

J Himmelbauer, H Schwarzenbacher, C Fuerst… - J. Dairy Sci., 2024 - researchgate.net
This study explores how the metafounder (MF) concept enhances genetic evaluations in
dairy cattle populations using single-step genomic best linear unbiased prediction …

Unraveling genetic admixture in the Indian crossbred cattle by different approaches using Bovine 50K BeadChip

D Pal, M Panigrahi, S Chhotaray, H Kumar… - Tropical Animal Health …, 2022 - Springer
With the upsurge of crossbreeding in India, the admixture levels are highly unpredictable in
the composite breeds. Hence, in the present study, 72 Vrindavani animals were assessed …

Genomic diversity and breed composition of Vietnamese smallholder dairy cows

NN Bang, BJ Hayes, RE Lyons… - Journal of Animal …, 2022 - Wiley Online Library
Vietnamese smallholder dairy cows (VDC) are the result of crossbreeding between different
zebu (ZEB) and taurine dairy breeds through many undefined generations. Thus, the …