Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots

S Herbette, L Taconnat, V Hugouvieux, L Piette… - Biochimie, 2006 - Elsevier
Transcriptional regulation in response to cadmium treatment was investigated in both roots
and leaves of Arabidopsis, using the whole genome CATMA microarray containing at least …

Genome‐wide expression profiling of the host response to root‐knot nematode infection in Arabidopsisa

F Jammes, P Lecomte, J de Almeida‐Engler… - The Plant …, 2005 - Wiley Online Library
During a compatible interaction, root‐knot nematodes (Meloidogyne spp.) induce the
redifferentiation of root cells into multinucleate nematode feeding cells (giant cells) …

Pre-processing Agilent microarray data

M Zahurak, G Parmigiani, W Yu, RB Scharpf… - BMC …, 2007 - Springer
Background Pre-processing methods for two-sample long oligonucleotide arrays,
specifically the Agilent technology, have not been extensively studied. The goal of this study …

Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling

K Cho, J Shibato, GK Agrawal, YH Jung… - Journal of proteome …, 2008 - ACS Publications
Ozone (O3), a serious air pollutant, is known to significantly reduce photosynthesis, growth,
and yield and to cause foliar injury and senescence. Here, integrated transcriptomics …

Global profiling of genes modified by endoplasmic reticulum stress in pancreatic beta cells reveals the early degradation of insulin mRNAs

P Pirot, N Naamane, F Libert, NE Magnusson… - Diabetologia, 2007 - Springer
Aims/hypothesis Pancreatic beta cells respond to endoplasmic reticulum (ER) stress by
activating the unfolded protein response. If the stress is prolonged, or the adaptive response …

Detecting and comparing non-coding RNAs in the high-throughput era

G Bussotti, C Notredame, AJ Enright - International journal of molecular …, 2013 - mdpi.com
In recent years there has been a growing interest in the field of non-coding RNA. This surge
is a direct consequence of the discovery of a huge number of new non-coding genes and of …

Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegyptiusing mRNA sequencing

JP David, F Faucon, A Chandor-Proust, R Poupardin… - BMC genomics, 2014 - Springer
Background Mosquito control programmes using chemical insecticides are increasingly
threatened by the development of resistance. Such resistance can be the consequence of …

Influenza A virus protein PB1-F2 exacerbates IFN-β expression of human respiratory epithelial cells

R Le Goffic, E Bouguyon, C Chevalier… - The Journal of …, 2010 - journals.aai.org
The PB1-F2 protein of the influenza A virus (IAV) contributes to viral pathogenesis by a
mechanism that is not well understood. PB1-F2 was shown to modulate apoptosis and to be …

Joint genetic analysis of gene expression data with inferred cellular phenotypes

L Parts, O Stegle, J Winn, R Durbin - PLoS genetics, 2011 - journals.plos.org
Even within a defined cell type, the expression level of a gene differs in individual samples.
The effects of genotype, measured factors such as environmental conditions, and their …

[HTML][HTML] Gene transcription in the leaves of rice undergoing salt-induced morphological changes (Oryza sativa L.)

DW Kim, J Shibato, GK Agrawal, S Fujihara… - Molecules and …, 2007 - Elsevier
We describe the gene expression profile of third leaves of rice (cv. Nipponbare) seedlings
subjected to salt stress (130 mM NaCl). Transcripts of Mn-SOD, Cu/Zn-SOD, cytosolic and …